Strain identifier

BacDive ID: 163853

Type strain: Yes

Species: Halorubrum yunnanense

Strain history: H. Xiang; Inst. of Microbiol., CAS, China; Q85.

NCBI tax ID(s): 1526162 (species)

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General

@ref: 67770

BacDive-ID: 163853

keywords: 16S sequence, Archaea, mesophilic

description: Halorubrum yunnanense JCM 30665 is a mesophilic archaeon that was isolated from Subterranean salt mine in Yunnan.

NCBI tax id

  • NCBI tax id: 1526162
  • Matching level: species

strain history

  • @ref: 67770
  • history: H. Xiang; Inst. of Microbiol., CAS, China; Q85.

doi: 10.13145/bacdive163853.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halorubrum
  • species: Halorubrum yunnanense
  • full scientific name: Halorubrum yunnanense Chen et al. 2015

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Haloferacales

family: Halorubraceae

genus: Halorubrum

species: Halorubrum yunnanense

full scientific name: Halorubrum yunnanense Chen et al. 2015

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Subterranean salt mine in Yunnan
  • country: China
  • origin.country: CHN
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Halorubrum yunnanense strain Q85 16S ribosomal RNA gene, partial sequence
  • accession: KJ644187
  • length: 1454
  • database: ena
  • NCBI tax ID: 1526162

GC content

  • @ref: 67770
  • GC-content: 66.3
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 30665, CGMCC 1.15057

literature

  • topic: Phylogeny
  • Pubmed-ID: 26374710
  • title: Halorubrum yunnanense sp. nov., isolated from a subterranean salt mine.
  • authors: Chen S, Liu HC, Zhao D, Yang J, Zhou J, Xiang H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000605
  • year: 2015
  • mesh: Base Composition, China, DNA, Archaeal/genetics, Fatty Acids/genetics, Genes, Archaeal, Halorubrum/*classification/genetics/isolation & purification, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride
  • topic2: Genetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/