Strain identifier
BacDive ID: 163818
Type strain: 
Species: Maritimibacter lacisalsi
Strain history: Z.-P. Liu; Inst. of Microbiol., CAS, China; X12M-4.
NCBI tax ID(s): 1526570 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163818
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Maritimibacter lacisalsi JCM 30555 is a mesophilic, Gram-negative bacterium that was isolated from Surface water sample of a salt lake.
NCBI tax id
- NCBI tax id: 1526570
- Matching level: species
strain history
- @ref: 67770
- history: Z.-P. Liu; Inst. of Microbiol., CAS, China; X12M-4.
doi: 10.13145/bacdive163818.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Maritimibacter
- species: Maritimibacter lacisalsi
- full scientific name: Maritimibacter lacisalsi Zhong et al. 2015
synonyms
@ref synonym 20215 Muriicola lacisalsi 20215 Sinisalibacter lacisalsi
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Maritimibacter
species: Maritimibacter lacisalsi
full scientific name: Maritimibacter lacisalsi Zhong et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.997 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface water sample of a salt lake
- geographic location: Xiaochaidan Lake in Qaidam basin, Qinghai Province
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_127317.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2429;97_4013;98_5119;99_127317&stattab=map
- Last taxonomy: Maritimibacter lacisalsi subclade
- 16S sequence: KJ782425
- Sequence Identity:
- Total samples: 76
- soil counts: 2
- aquatic counts: 69
- animal counts: 4
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Maritimibacter lacisalsi strain X12M-4 16S ribosomal RNA gene, partial sequence
- accession: KJ782425
- length: 1430
- database: ena
- NCBI tax ID: 1526570
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sinisalibacter lacisalsi CGMCC 1.12922 | GCA_014640115 | scaffold | ncbi | 1526570 |
| 66792 | Maritimibacter lacisalsi strain CGMCC 1.12922 | 1526570.3 | wgs | patric | 1526570 |
GC content
- @ref: 67770
- GC-content: 65.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 89.493 | no |
| gram-positive | no | 97.847 | no |
| anaerobic | no | 91.278 | no |
| aerobic | yes | 79.587 | no |
| halophile | yes | 77.532 | no |
| spore-forming | no | 96.29 | no |
| glucose-util | yes | 78.374 | no |
| thermophile | no | 95.872 | yes |
| motile | no | 53.348 | no |
| glucose-ferment | no | 89.909 | no |
External links
@ref: 67770
culture collection no.: JCM 30555, CGMCC 1.12922
literature
- topic: Phylogeny
- Pubmed-ID: 26297482
- title: Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007.
- authors: Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000437
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, *Salinity, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |