Strain identifier

BacDive ID: 163777

Type strain: Yes

Species: Loktanella aquimaris

Strain Designation: C5

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; C5.

NCBI tax ID(s): 1610528 (species)

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General

@ref: 67770

BacDive-ID: 163777

DSM-Number: 113302

keywords: 16S sequence, Bacteria, mesophilic

description: Loktanella aquimaris C5 is a mesophilic bacterium that was isolated from Seawater in Tongyeong.

NCBI tax id

  • NCBI tax id: 1610528
  • Matching level: species

strain history

  • @ref: 67770
  • history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; C5.

doi: 10.13145/bacdive163777.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Loktanella
  • species: Loktanella aquimaris
  • full scientific name: Loktanella aquimaris Kim et al. 2016

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Loktanella

species: Loktanella aquimaris

full scientific name: Loktanella aquimaris Kim et al.

strain designation: C5

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 69054
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth30mesophilic
69054positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
67770-++/-+/--+---------+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
67770-----+-++/-+---+/----+/-+/--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationlatitudelongitude
67770Seawater in TongyeongRepublic of KoreaKORAsia
69054fish cageRepublic of KoreaKORAsiaTongyeong34.9939128.674

taxonmaps

  • @ref: 69479
  • File name: preview.99_7177.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2693;97_4123;98_5276;99_7177&stattab=map
  • Last taxonomy: Loktanella
  • 16S sequence: KP716799
  • Sequence Identity:
  • Total samples: 1066
  • soil counts: 91
  • aquatic counts: 809
  • animal counts: 145
  • plant counts: 21

Sequence information

16S sequences

  • @ref: 67770
  • description: Loktanella aquimaris 16S ribosomal RNA gene, partial sequence
  • accession: KP716799
  • length: 1400
  • database: ena
  • NCBI tax ID: 1610528

GC content

  • @ref: 67770
  • GC-content: 61
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 30382, KEMB 3-892, DSM 113302

literature

  • topic: Phylogeny
  • Pubmed-ID: 26607359
  • title: Loktanella aquimaris sp. nov., Isolated from Seawater.
  • authors: Kim K, Srinivasan S, Lee SS
  • journal: Curr Microbiol
  • DOI: 10.1007/s00284-015-0945-0
  • year: 2015
  • mesh: Aerobiosis, Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69054Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-113302Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 113302)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/