Strain identifier
BacDive ID: 163768
Type strain: 
Species: Thermus tenuipuniceus
Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 76954.
NCBI tax ID(s): 2078690 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163768
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, Gram-negative
description: Thermus tenuipuniceus JCM 30350 is a thermophilic, Gram-negative bacterium that was isolated from Rehai geothermal field.
NCBI tax id
- NCBI tax id: 2078690
- Matching level: species
strain history
- @ref: 67770
- history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 76954.
doi: 10.13145/bacdive163768.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Thermus
- species: Thermus tenuipuniceus
- full scientific name: Thermus tenuipuniceus Zhou et al. 2019
@ref: 67770
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Thermus
species: Thermus tenuipuniceus
full scientific name: Thermus tenuipuniceus Zhou et al. 2019
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.952
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 67770 | positive | growth | 60 | thermophilic | |
| 69480 | thermophilic | 100 |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.814
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rehai geothermal field
- geographic location: Tengchong, Yunnan
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Thermus sp. gene for 16S ribosomal RNA, partial sequence
- accession: LC366928
- length: 1531
- database: ena
- NCBI tax ID: 2078690
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermus sp. YIM 76954 | 2078690.3 | wgs | patric | 2078690 |
| 66792 | Thermus tenuipuniceus YIM 76954 | 2896171935 | draft | img | 2078690 |
| 67770 | Thermus tenuipuniceus YIM 76954 | GCA_002964845 | scaffold | ncbi | 2078690 |
GC content
- @ref: 67770
- GC-content: 65.5
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 79 | no |
| motile | no | 89.572 | no |
| gram-positive | no | 96.182 | no |
| anaerobic | no | 93.618 | no |
| aerobic | yes | 75.734 | no |
| halophile | no | 88.338 | no |
| spore-forming | no | 92.492 | no |
| glucose-util | yes | 89.127 | no |
| flagellated | no | 97.873 | no |
| thermophile | yes | 100 | yes |
| glucose-ferment | no | 85.469 | no |
External links
@ref: 67770
culture collection no.: JCM 30350, KCTC 4677, YIM 76954
literature
- topic: Phylogeny
- Pubmed-ID: 30217696
- title: Physiological and genomic properties of Thermus tenuipuniceus sp. nov., a novel slight reddish color member isolated from a terrestrial geothermal spring.
- authors: Zhou EM, Xian WD, Jiao JY, Liu L, Li MM, Ding YP, Yin YR, Zhao J, Nimaichand S, Xiao M, Li WJ
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.08.011
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA Fingerprinting, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ferric Compounds/metabolism, Geologic Sediments/microbiology, Hot Springs/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thermus/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |