Strain identifier

BacDive ID: 1637

Type strain: Yes

Species: Bartonella bovis

Strain Designation: 91-4

Strain history: CIP <- 2000, Y. Piemont, Louis Pasteur Univ., Strasbourg, France: strain 91-4 <- Boulouis

NCBI tax ID(s): 1094491 (strain), 155194 (species)

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General

@ref: 15723

BacDive-ID: 1637

DSM-Number: 21464

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, colony-forming, animal pathogen

description: Bartonella bovis 91-4 is a microaerophile, mesophilic, Gram-negative animal pathogen that forms circular colonies and was isolated from blood of a domestic cow.

NCBI tax id

NCBI tax idMatching level
1094491strain
155194species

strain history

@refhistory
15723<- CIP; strain 91-4 {2008} <- Y. Piemont, ULP, Strasbourg, France
116909CIP <- 2000, Y. Piemont, Louis Pasteur Univ., Strasbourg, France: strain 91-4 <- Boulouis

doi: 10.13145/bacdive1637.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella bovis
  • full scientific name: Bartonella bovis Bermond et al. 2002

@ref: 15723

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella bovis

full scientific name: Bartonella bovis Bermond et al. 2002

strain designation: 91-4

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidencemotility
23360negativerod-shaped
69480negative99.981
116909negativerod-shapedno

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
233600.3-1.1 mmgrey-whitecircular10 days5% rabbit blood agar
560503 days
116909

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15723COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
233605% rabbit blood agaryes
40199MEDIUM 70 - columbia agar with horse blood and hemin for BartonellayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);Hemin solution - M00149 (10.000 ml)
116909CIP Medium 70yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=70

culture temp

@refgrowthtypetemperaturerange
15723positivegrowth37mesophilic
23360positivegrowth35mesophilic
40199positivegrowth37mesophilic
116909positivegrowth30-37mesophilic
116909nogrowth10psychrophilic
116909nogrowth15psychrophilic
116909nogrowth25mesophilic
116909nogrowth41thermophilic
116909nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15723microaerophile
56050microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.996

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
233603122bis-4-nitrophenyl phosphate+hydrolysis
23360506227N-acetylglucosamine+hydrolysis
2336027082trehalose+hydrolysis
2336029016arginine+other
2336015428glycine+other
2336025017leucine+other
2336025094lysine+other
2336016811methionine+other
2336026271proline+other
2336027897tryptophan+other
1169094853esculin-hydrolysis
116909606565hippurate-hydrolysis
11690917632nitrate-reduction
11690916301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2336015688acetoinno
11690935581indoleno

metabolite tests

  • @ref: 23360
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
23360catalase-1.11.1.6
23360cytochrome oxidase-1.9.3.1
23360urease-3.5.1.5
116909oxidase+
116909beta-galactosidase+3.2.1.23
116909alcohol dehydrogenase-1.1.1.1
116909gelatinase-
116909catalase-1.11.1.6
116909gamma-glutamyltransferase-2.3.2.2
116909lysine decarboxylase-4.1.1.18
116909ornithine decarboxylase-4.1.1.17
116909phenylalanine ammonia-lyase-4.3.1.24
116909tryptophan deaminase-
116909urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
15723blood of a domestic cowIle de FranceFranceFRAEurope
56050Cow blood,domistic animal
116909Food, Beef, bloodIle de FranceFranceFRAEurope1998

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_3284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_2519;99_3284&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AF293391
  • Sequence Identity:
  • Total samples: 180
  • soil counts: 21
  • aquatic counts: 30
  • animal counts: 125
  • plant counts: 4

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15723yes2Risk group (German classification)
1169092Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15723
  • description: Bartonella sp. 91-4 16S ribosomal RNA gene, partial sequence
  • accession: AF293391
  • length: 1405
  • database: ena
  • NCBI tax ID: 1094491

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella bovis 91-4GCA_000384965chromosomencbi1094491
66792Bartonella bovis CIP 106692GCA_902728095contigncbi155194
66792Bartonella bovis 91-41094491.5completepatric1094491
66792Bartonella bovis strain CIP 106692155194.4wgspatric155194
66792Bartonella bovis 91-42597489901draftimg1094491

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes59.828no
flagellatedno90.558no
gram-positiveno99.015yes
anaerobicno96.645yes
aerobicno97.035yes
halophileno63.891no
spore-formingno97.219no
glucose-utilyes50.803no
thermophileno79.281yes
glucose-fermentno72.2no

External links

@ref: 15723

culture collection no.: DSM 21464, CCUG 43828, CIP 106692

straininfo link

  • @ref: 71284
  • straininfo: 100530

literature

  • topic: Phylogeny
  • Pubmed-ID: 11931146
  • title: Bartonella bovis Bermond et al. sp. nov. and Bartonella capreoli sp. nov., isolated from European ruminants.
  • authors: Bermond D, Boulouis HJ, Heller R, Van Laere G, Monteil H, Chomel BB, Sander A, Dehio C, Piemont Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-2-383
  • year: 2002
  • mesh: Animals, Bacteremia, Bartonella/*classification/isolation & purification/physiology, Cattle/*microbiology, Citrate (si)-Synthase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deer/*microbiology, Europe, Female, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15723Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21464)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21464
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23360Delphine Bermond, Henri-Jean Boulouis, Rémy Heller, Guy Van Laere, Henri Monteil, Bruno B Chomel, Anna Sander, Christoph Dehio, Yves Piémont10.1099/00207713-52-2-383Bartonella bovis Bermond et al. sp. nov. and Bartonella capreoli sp. nov., isolated from European ruminantsIJSEM 52: 383-390 200211931146
40199Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18850
56050Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 43828)https://www.ccug.se/strain?id=43828
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71284Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100530.1StrainInfo: A central database for resolving microbial strain identifiers
116909Curators of the CIPCollection of Institut Pasteur (CIP 106692)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106692