Strain identifier

BacDive ID: 16362

Type strain: Yes

Species: Streptomyces sanglieri

Strain Designation: A46R51

Strain history: CIP <- 2003, NCIMB <- M. Goodfellow, Newcastle Univ., Newcastle, UK: strain A46R51

NCBI tax ID(s): 193460 (species)

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General

@ref: 10576

BacDive-ID: 16362

DSM-Number: 41791

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-positive, filament-shaped

description: Streptomyces sanglieri A46R51 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil from hay plots.

NCBI tax id

  • NCBI tax id: 193460
  • Matching level: species

strain history

@refhistory
10576<- M. Goodfellow, Univ. Newcastle; A46R51
67770NCIMB 13929 <-- M. Goodfellow A46R51.
122418CIP <- 2003, NCIMB <- M. Goodfellow, Newcastle Univ., Newcastle, UK: strain A46R51

doi: 10.13145/bacdive16362.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sanglieri
  • full scientific name: Streptomyces sanglieri Manfio et al. 2003

@ref: 10576

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sanglieri

full scientific name: Streptomyces sanglieri Manfio et al. 2003

strain designation: A46R51

type strain: yes

Morphology

cell morphology

  • @ref: 122418
  • gram stain: positive
  • cell shape: filament-shaped
  • motility: no

colony morphology

  • @ref: 122418
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10576GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
32900MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
122418CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperaturerange
10576positivegrowth28mesophilic
32900positivegrowth30mesophilic
67770positivegrowth28mesophilic
122418positivegrowth10-30
122418nogrowth37mesophilic
122418nogrowth41thermophilic
122418nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122418
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122418NaClpositivegrowth0-6 %
122418NaClnogrowth8 %
122418NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12241816947citrate-carbon source
1224184853esculin+hydrolysis
122418606565hippurate-hydrolysis
12241817632nitrate+reduction
12241816301nitrite-reduction
12241817632nitrate-respiration

antibiotic resistance

  • @ref: 122418
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 122418
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12241815688acetoin-
12241817234glucose-

enzymes

@refvalueactivityec
122418oxidase-
122418beta-galactosidase+3.2.1.23
122418alcohol dehydrogenase-1.1.1.1
122418gelatinase+
122418amylase+
122418DNase+
122418caseinase+3.4.21.50
122418catalase+1.11.1.6
122418tween esterase+
122418gamma-glutamyltransferase+2.3.2.2
122418lecithinase-
122418lipase+
122418lysine decarboxylase-4.1.1.18
122418ornithine decarboxylase-4.1.1.17
122418phenylalanine ammonia-lyase-4.3.1.24
122418protease+
122418tryptophan deaminase-
122418urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122418-+++-+----++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122418+++++----++----+++++-+-++------+-----+-----------++--++----+++----------++-+-+-++---+-+-+++++++-+++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10576soil from hay plotsNorthumberland, Cockle Park Experimental FarmUnited KingdomGBREurope
67770Soil from meadow hay plotsUnited KingdomGBREurope
122418Environment, Soil from hay plotsUnited KingdomGBREurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2889.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_2889&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: U22974
  • Sequence Identity:
  • Total samples: 2531
  • soil counts: 1589
  • aquatic counts: 125
  • animal counts: 280
  • plant counts: 537

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
105761Risk group (German classification)
1224181Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces sanglieri gene for 16S rRNA, partial sequence, strain: NBRC 100784AB2499451481ena193460
67770Streptomyces sp., strain GP 770 16S ribosomal RNA, partial sequenceU229741481ena1931

GC content

@refGC-contentmethod
1057668thermal denaturation, midpoint method (Tm)
6777074thermal denaturation, midpoint method (Tm)

External links

@ref: 10576

culture collection no.: DSM 41791, NCIMB 13929, JCM 12607, CGMCC 4.1831, CIP 108189, NBRC 100784

straininfo link

  • @ref: 85417
  • straininfo: 389475

literature

  • Pubmed-ID: 26721619
  • title: Streptomyces sanglieri which colonised and enhanced the growth of Elaeis guineensis Jacq. seedlings was antagonistic to Ganoderma boninense in in vitro studies.
  • authors: Nur Azura AB, Yusoff M, Tan GY, Jegadeesh R, Appleton DR, Vikineswary S
  • journal: J Ind Microbiol Biotechnol
  • DOI: 10.1007/s10295-015-1724-4
  • year: 2015
  • mesh: *Antifungal Agents, Arecaceae/*growth & development/*microbiology, Chromatography, High Pressure Liquid, Ganoderma/*physiology, Palm Oil, Pest Control, Biological/*methods, Plant Diseases/microbiology, Plant Oils, Plant Roots/growth & development/microbiology, Seedlings/*growth & development/*microbiology, Streptomyces/growth & development/*physiology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10576Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41791)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41791
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32900Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5783
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85417Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389475.1StrainInfo: A central database for resolving microbial strain identifiers
122418Curators of the CIPCollection of Institut Pasteur (CIP 108189)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108189