Strain identifier
BacDive ID: 163544
Type strain:
Species: Rhizobium sp.
Strain history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; K8617-6-3b.
NCBI tax ID(s): 1818763 (species)
General
@ref: 67770
BacDive-ID: 163544
keywords: 16S sequence, Bacteria, mesophilic
description: Rhizobium sp. JCM 28659 is a mesophilic bacterium that was isolated from Reddish substances on the stone of the south wall in the stone chamber.
NCBI tax id
- NCBI tax id: 1818763
- Matching level: species
strain history
- @ref: 67770
- history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; K8617-6-3b.
doi: 10.13145/bacdive163544.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Rhizobium
- species: Rhizobium sp.
- full scientific name: Rhizobium Frank 1889 (Approved Lists 1980)
synonyms
@ref synonym 20215 Heterorhizobium 20215 Paenirhizobium 20215 Alirhizobium 20215 Peteryoungia
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Rhizobium
species: Rhizobium sp.
full scientific name: Rhizobium sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Reddish substances on the stone of the south wall in the stone chamber
- geographic location: Kitora Tumulus, Asuka Village, Nara Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_6.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_6;97_6;98_6;99_6&stattab=map
- Last taxonomy: Agrobacterium
- 16S sequence: LC133690
- Sequence Identity:
- Total samples: 5894
- soil counts: 595
- aquatic counts: 822
- animal counts: 3746
- plant counts: 731
Sequence information
16S sequences
- @ref: 67770
- description: Rhizobium sp. JCM 28659 gene for 16S ribosomal RNA, partial sequence
- accession: LC133690
- length: 1445
- database: ena
- NCBI tax ID: 1818763
External links
@ref: 67770
culture collection no.: JCM 28659
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |