Strain identifier

BacDive ID: 163498

Type strain: No

Species: Lysinibacillus sp.

Strain history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T8804-4-3b.

NCBI tax ID(s): 1818730 (species)

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General

@ref: 67770

BacDive-ID: 163498

keywords: 16S sequence, Bacteria

description: Lysinibacillus sp. JCM 28310 is a bacterium that was isolated from Clay soil around eastern area of conservation facility.

NCBI tax id

  • NCBI tax id: 1818730
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T8804-4-3b.

doi: 10.13145/bacdive163498.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Lysinibacillus
  • species: Lysinibacillus sp.
  • full scientific name: Lysinibacillus Ahmed et al. 2007

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Caryophanaceae

genus: Lysinibacillus

species: Lysinibacillus sp.

full scientific name: Lysinibacillus sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Clay soil around eastern area of conservation facility
  • geographic location: Takamatsuzuka Tumulus, Asuka Village, Nara Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_1772.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_503;97_577;98_664;99_1772&stattab=map
  • Last taxonomy: Lysinibacillus
  • 16S sequence: LC133657
  • Sequence Identity:
  • Total samples: 2229
  • soil counts: 1393
  • aquatic counts: 238
  • animal counts: 561
  • plant counts: 37

Sequence information

16S sequences

  • @ref: 67770
  • description: Lysinibacillus sp. JCM 28310 gene for 16S ribosomal RNA, partial sequence
  • accession: LC133657
  • length: 1512
  • database: nuccore
  • NCBI tax ID: 1818730

External links

@ref: 67770

culture collection no.: JCM 28310

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/