Strain identifier
BacDive ID: 163497
Type strain: 
Species: Nocardioides sp.
Strain history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T7829-1-4b.
NCBI tax ID(s): 1818729 (species)
General
@ref: 67770
BacDive-ID: 163497
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardioides sp. JCM 28309 is a mesophilic bacterium that was isolated from Greenish sand under the floor 4 .
NCBI tax id
- NCBI tax id: 1818729
- Matching level: species
strain history
- @ref: 67770
- history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T7829-1-4b.
doi: 10.13145/bacdive163497.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides sp.
- full scientific name: Nocardioides Prauser 1976 (Approved Lists 1980)
synonyms
@ref synonym 20215 Marmoricola 20215 Pimelobacter
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides sp.
full scientific name: Nocardioides sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Greenish sand under the floor 4 (during relocation of the stone chamber)
- geographic location: Takamatsuzuka Tumulus, Asuka Village, Nara Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_7662.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_3563;97_4377;98_5605;99_7662&stattab=map
- Last taxonomy: Nocardioides
- 16S sequence: LC133656
- Sequence Identity:
- Total samples: 15718
- soil counts: 9755
- aquatic counts: 920
- animal counts: 2174
- plant counts: 2869
Sequence information
16S sequences
- @ref: 67770
- description: Nocardioides sp. JCM 28309 gene for 16S ribosomal RNA, partial sequence
- accession: LC133656
- length: 1474
- database: ena
- NCBI tax ID: 1818729
External links
@ref: 67770
culture collection no.: JCM 28309
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |