Strain identifier

BacDive ID: 163494

Type strain: No

Species: Phyllobacterium sp.

Strain history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T7611-4-6b.

NCBI tax ID(s): 1818725 (species)

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General

@ref: 67770

BacDive-ID: 163494

keywords: 16S sequence, Bacteria

description: Phyllobacterium sp. JCM 28305 is a bacterium that was isolated from Blackish viscous gels and plant roots on the east wall 1 .

NCBI tax id

  • NCBI tax id: 1818725
  • Matching level: species

strain history

  • @ref: 67770
  • history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; T7611-4-6b.

doi: 10.13145/bacdive163494.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Phyllobacterium
  • species: Phyllobacterium sp.
  • full scientific name: Phyllobacterium (ex Knösel 1962) Knösel 1984

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Phyllobacterium

species: Phyllobacterium sp.

full scientific name: Phyllobacterium sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Blackish viscous gels and plant roots on the east wall 1 (during relocation of the stone chamber)
  • geographic location: Takamatsuzuka Tumulus, Asuka Village, Nara Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_13180.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_904;97_1053;98_9978;99_13180&stattab=map
  • Last taxonomy: Phyllobacterium
  • 16S sequence: LC133652
  • Sequence Identity:
  • Total samples: 646
  • soil counts: 164
  • aquatic counts: 54
  • animal counts: 375
  • plant counts: 53

Sequence information

16S sequences

  • @ref: 67770
  • description: Phyllobacterium sp. JCM 28305 gene for 16S ribosomal RNA, partial sequence
  • accession: LC133652
  • length: 1445
  • database: nuccore
  • NCBI tax ID: 1818725

External links

@ref: 67770

culture collection no.: JCM 28305

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/