Strain identifier

BacDive ID: 163339

Type strain: No

Species: Planococcus citreus

Strain history: M. V. Hao HK 707 <-- AJ 1657 <-- K. Komagata.

NCBI tax ID(s): 1373 (species)

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General

@ref: 67770

BacDive-ID: 163339

keywords: 16S sequence, Bacteria

description: Planococcus citreus JCM 2534 is a bacterium that was isolated from Frozen food.

NCBI tax id

  • NCBI tax id: 1373
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. V. Hao HK 707 <-- AJ 1657 <-- K. Komagata.

doi: 10.13145/bacdive163339.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Planococcus
  • species: Planococcus citreus
  • full scientific name: Planococcus citreus Migula 1894 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Caryophanaceae

genus: Planococcus

species: Planococcus citreus

full scientific name: Planococcus citreus Migula 1894

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8 (MK-7)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Frozen food

taxonmaps

  • @ref: 69479
  • File name: preview.99_129.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_67;97_70;98_75;99_129&stattab=map
  • Last taxonomy: Planococcus
  • 16S sequence: LC379147
  • Sequence Identity:
  • Total samples: 12884
  • soil counts: 6586
  • aquatic counts: 2240
  • animal counts: 2949
  • plant counts: 1109

Sequence information

16S sequences

  • @ref: 67770
  • description: Planococcus citreus gene for 16S rRNA, partial sequence, strain: JCM 2534
  • accession: LC379147
  • length: 1473
  • database: nuccore
  • NCBI tax ID: 1373

GC content

  • @ref: 67770
  • GC-content: 50

External links

@ref: 67770

culture collection no.: JCM 2534, CCM 2415, IAM 13050

straininfo link

  • @ref: 114034
  • straininfo: 9206

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114034Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID9206.1