Strain identifier

BacDive ID: 163232

Type strain: No

Species: Rhodococcus rhodochrous

Strain Designation: 1652

Strain history: CIP <- 1995, JCM <- IAM <- ATCC <- R.S. Breed, KMBC, Mycobacterium rhodochrous: strain 1652 <- Pribram Collection <- Hefferan, Bacillus mycoides corallinus

NCBI tax ID(s): 1829 (species)

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General

@ref: 67770

BacDive-ID: 163232

keywords: obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Rhodococcus rhodochrous 1652 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from Mississippi River water.

NCBI tax id

  • NCBI tax id: 1829
  • Matching level: species

strain history

@refhistory
67770IAM 12126 <-- ATCC 999 <-- R. S. Breed strain KMBC ("Bacillus mycoides corallinus") <-- Král Collection <-- M. Hefferan.
122226CIP <- 1995, JCM <- IAM <- ATCC <- R.S. Breed, KMBC, Mycobacterium rhodochrous: strain 1652 <- Pribram Collection <- Hefferan, Bacillus mycoides corallinus

doi: 10.13145/bacdive163232.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus rhodochrous
  • full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Staphylococcus rhodochrous
    20215Rhodococcus roseus

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus rhodochrous

full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974

strain designation: 1652

type strain: no

Morphology

cell morphology

  • @ref: 122226
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 122226
  • name: CIP Medium 3
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth28mesophilic
122226positivegrowth10-45

Physiology and metabolism

oxygen tolerance

  • @ref: 122226
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122226NaClpositivegrowth0-6 %
122226NaClnogrowth8 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1222264853esculin+hydrolysis
12222617234glucose-fermentation
122226606565hippurate+hydrolysis
12222617716lactose-fermentation
12222617632nitrate+reduction
12222616301nitrite-reduction
122226132112sodium thiosulfate-builds gas from
12222617234glucose+degradation
12222617632nitrate-respiration
6837117754glycerol-builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose-builds acid from
6837130849L-arabinose-builds acid from
6837116988D-ribose-builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose-builds acid from
6837117266L-sorbose-builds acid from
6837162345L-rhamnose-builds acid from
6837116813galactitol-builds acid from
6837117268myo-inositol-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837127613amygdalin-builds acid from
6837118305arbutin-builds acid from
6837117057cellobiose-builds acid from
6837117306maltose-builds acid from
6837117716lactose-builds acid from
6837128053melibiose-builds acid from
6837117992sucrose-builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose-builds acid from
6837128017starch-builds acid from
6837128087glycogen-builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose-builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose-builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371Potassium 5-ketogluconate-builds acid from

metabolite production

  • @ref: 122226
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12222615688acetoin-
12222617234glucose+

enzymes

@refvalueactivityec
122226oxidase-
122226beta-galactosidase-3.2.1.23
122226alcohol dehydrogenase-1.1.1.1
122226gelatinase-
122226amylase-
122226DNase-
122226caseinase-3.4.21.50
122226catalase+1.11.1.6
122226tween esterase-
122226gamma-glutamyltransferase+2.3.2.2
122226lecithinase-
122226lysine decarboxylase-4.1.1.18
122226ornithine decarboxylase-4.1.1.17
122226tryptophan deaminase-
122226urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122226--++-+-----+----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122226-----+/-----+/-+/-+/-----+/-+/------+/-+/------+/-------------+/-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122226-+-+----------------------+----+-+--+------------+------------+++++++------+---+++------+-+------++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Mississippi River water
122226Environment, Mississippi river waterMississippiUnited States of AmericaUSANorth America

Safety information

risk assessment

  • @ref: 122226
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

GC content

  • @ref: 67770
  • GC-content: 68.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 2157, ATCC 999, CIP 104495, IAM 12126, NCIMB 9948, VKM Ac-780

straininfo link

  • @ref: 113974
  • straininfo: 44351

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
113974Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID44351.1
122226Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104495Collection of Institut Pasteur (CIP 104495)