Strain identifier

BacDive ID: 163232

Type strain: No

Species: Rhodococcus rhodochrous

Strain Designation: 1652

Strain history: CIP <- 1995, JCM <- IAM <- ATCC <- R.S. Breed, KMBC, Mycobacterium rhodochrous: strain 1652 <- Pribram Collection <- Hefferan, Bacillus mycoides corallinus

NCBI tax ID(s): 1829 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 163232

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Rhodococcus rhodochrous 1652 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from Mississippi River water.

NCBI tax id

  • NCBI tax id: 1829
  • Matching level: species

strain history

@refhistory
67770IAM 12126 <-- ATCC 999 <-- R. S. Breed strain KMBC ("Bacillus mycoides corallinus") <-- Král Collection <-- M. Hefferan.
122226CIP <- 1995, JCM <- IAM <- ATCC <- R.S. Breed, KMBC, Mycobacterium rhodochrous: strain 1652 <- Pribram Collection <- Hefferan, Bacillus mycoides corallinus

doi: 10.13145/bacdive163232.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Rhodococcus
  • species: Rhodococcus rhodochrous
  • full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Rhodococcus roseus
    20215Staphylococcus rhodochrous

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus rhodochrous

full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974

strain designation: 1652

type strain: no

Morphology

cell morphology

  • @ref: 122226
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 122226
  • name: CIP Medium 3
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
67770positivegrowth28
122226positivegrowth10-45

Physiology and metabolism

oxygen tolerance

  • @ref: 122226
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
122226NaClpositivegrowth0-6 %
122226NaClnogrowth8 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371starch-builds acid from28017
68371melezitose-builds acid from6731
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371myo-inositol-builds acid from17268
68371L-rhamnose-builds acid from62345
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122226esculin+hydrolysis4853
122226glucose-fermentation17234
122226hippurate+hydrolysis606565
122226lactose-fermentation17716
122226nitrate+reduction17632
122226nitrite-reduction16301
122226sodium thiosulfate-builds gas from132112
122226glucose+degradation17234
122226nitrate-respiration17632
68371Potassium 5-ketogluconate-builds acid from
68371glycogen-builds acid from28087
68371inulin-builds acid from15443
68371sucrose-builds acid from17992

metabolite production

  • @ref: 122226
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12222615688acetoin-
12222617234glucose+

enzymes

@refvalueactivityec
122226oxidase-
122226beta-galactosidase-3.2.1.23
122226alcohol dehydrogenase-1.1.1.1
122226gelatinase-
122226amylase-
122226DNase-
122226caseinase-3.4.21.50
122226catalase+1.11.1.6
122226tween esterase-
122226gamma-glutamyltransferase+2.3.2.2
122226lecithinase-
122226lysine decarboxylase-4.1.1.18
122226ornithine decarboxylase-4.1.1.17
122226tryptophan deaminase-
122226urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122226--++-+-----+----+---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122226-----+/-----+/-+/-+/-----+/-+/------+/-+/------+/-------------+/-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122226-+-+----------------------+----+-+--+------------+------------+++++++------+---+++------+-+------++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67770Mississippi River water
122226Environment, Mississippi river waterMississippiUnited States of AmericaUSANorth America

Safety information

risk assessment

  • @ref: 122226
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

GC content

  • @ref: 67770
  • GC-content: 68.9
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 2157, ATCC 999, CIP 104495, IAM 12126, NCIMB 9948, VKM Ac-780

straininfo link

  • @ref: 113974
  • straininfo: 44351

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
113974Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID44351.1
122226Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104495Collection of Institut Pasteur (CIP 104495)