Strain identifier
BacDive ID: 163049
Type strain: 
Species: Agrobacterium sp.
Strain history: IAM 13941 <-- LMG 294 <-- J. Tempe <-- A. Braun strain EU6.
NCBI tax ID(s): 361 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163049
keywords: 16S sequence, Bacteria, mesophilic
description: Agrobacterium sp. JCM 20992 is a mesophilic bacterium of the family Rhizobiaceae.
NCBI tax id
- NCBI tax id: 361
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13941 <-- LMG 294 <-- J. Tempe <-- A. Braun strain EU6.
doi: 10.13145/bacdive163049.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Agrobacterium
- species: Agrobacterium sp.
- full scientific name: Agrobacterium Conn 1942 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Agrobacterium
species: Agrobacterium sp.
full scientific name: Agrobacterium sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_3457.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_6;97_6;98_6;99_3457&stattab=map
- Last taxonomy: Agrobacterium
- 16S sequence: FR828342
- Sequence Identity:
- Total samples: 1548
- soil counts: 173
- aquatic counts: 101
- animal counts: 477
- plant counts: 797
Sequence information
16S sequences
- @ref: 67770
- description: Agrobacterium rubi partial 16S rRNA gene, strain LMG 294
- accession: FR828342
- length: 1383
- database: ena
- NCBI tax ID: 28099
GC content
- @ref: 67770
- GC-content: 58.8
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 20992, IAM 13941, LMG 294
straininfo link
- @ref: 113817
- straininfo: 630
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113817 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID630.1 |