Strain identifier
BacDive ID: 162786
Type strain: 
Species: Tetragenococcus halophilus subsp. halophilus
Strain history: C. Kaneuchi <-- K. Komagata <-- S. Tanasupawat Ph-63.
NCBI tax ID(s): 1513897 (subspecies)
General
@ref: 67770
BacDive-ID: 162786
keywords: 16S sequence, Bacteria, mesophilic
description: Tetragenococcus halophilus subsp. halophilus JCM 2015 is a mesophilic bacterium that was isolated from Pla-chom .
NCBI tax id
- NCBI tax id: 1513897
- Matching level: subspecies
strain history
- @ref: 67770
- history: C. Kaneuchi <-- K. Komagata <-- S. Tanasupawat Ph-63.
doi: 10.13145/bacdive162786.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Tetragenococcus
- species: Tetragenococcus halophilus subsp. halophilus
- full scientific name: Tetragenococcus halophilus subsp. halophilus (Mees 1934) Justé et al. 2012
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Tetragenococcus
species: Tetragenococcus halophilus subsp. halophilus
full scientific name: Tetragenococcus halophilus subsp. halophilus (Mees 1934) Just‚ et al. 2012
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Pla-chom (fermented small fish)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Tetragenococcus halophilus gene for 16S rRNA, partial sequence, strain: JCM 2015 | AB911538 | 1502 | ena | 51669 |
| 67770 | Tetragenococcus halophilus strain JCM 2015 16S ribosomal RNA gene, partial sequence | EU689058 | 1364 | ena | 51669 |
| 67770 | Tetragenococcus halophilus subsp. halophilus gene for 16S ribosomal RNA, partial sequence, strain: JCM 2015 | LC269259 | 1499 | ena | 1513897 |
GC content
- @ref: 67770
- GC-content: 36.6
External links
@ref: 67770
culture collection no.: JCM 2015
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |