Strain identifier
BacDive ID: 162778
Type strain: 
Species: Escherichia coli
Strain history: IAM 1264 <-- ATCC 10798 <-- C. E. Clifton strain K-12.
NCBI tax ID(s): 1236524 (strain), 562 (species)
General
@ref: 67770
BacDive-ID: 162778
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Escherichia coli JCM 20135 is a mesophilic, Gram-negative bacterium that was isolated from Feces from diphtheria convalescent.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1236524 | strain |
| 562 | species |
strain history
- @ref: 67770
- history: IAM 1264 <-- ATCC 10798 <-- C. E. Clifton strain K-12.
doi: 10.13145/bacdive162778.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.982 | |
| 69480 | 97.425 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.679 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Feces from diphtheria convalescent
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Escherichia coli ATCC 10798 | GCA_002087985 | scaffold | ncbi | 562 |
| 66792 | Escherichia coli JCM 20135 | GCA_000614505 | contig | ncbi | 1236524 |
| 66792 | Escherichia coli JCM 20135 | 1236524.3 | wgs | patric | 1236524 |
| 66792 | Escherichia coli strain ATCC 10798 | 562.24236 | plasmid | patric | 562 |
| 66792 | Escherichia coli strain ATCC 10798 | 562.16371 | wgs | patric | 562 |
| 66792 | Escherichia coli JCM 20135 | 2585427869 | draft | img | 1236524 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.03 | no |
| gram-positive | no | 98.23 | no |
| anaerobic | no | 94.194 | no |
| aerobic | yes | 83.421 | no |
| halophile | no | 91.757 | no |
| spore-forming | no | 94.346 | no |
| glucose-util | yes | 93.749 | no |
| flagellated | no | 54.15 | no |
| thermophile | no | 99.309 | no |
| glucose-ferment | yes | 93.509 | no |
External links
@ref: 67770
culture collection no.: JCM 20135, ATCC 10798, BCRC 10362, BCRC 12569, IAM 1264, KCTC 2443, NCIMB 12805, NRRL B-3707
straininfo link
- @ref: 113595
- straininfo: 35283
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113595 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID35283.1 |