Strain identifier
BacDive ID: 162686
Type strain: 
Species: Pseudomonas putida
Strain history: IAM 1003 <-- K. Yokozawa 44F.
NCBI tax ID(s): 303 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162686
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas putida JCM 20005 is a mesophilic bacterium that was isolated from Canal water.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
strain history
- @ref: 67770
- history: IAM 1003 <-- K. Yokozawa 44F.
doi: 10.13145/bacdive162686.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Canal water
taxonmaps
- @ref: 69479
- File name: preview.99_863.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_863&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: LC571912
- Sequence Identity:
- Total samples: 1972
- soil counts: 444
- aquatic counts: 421
- animal counts: 802
- plant counts: 305
Sequence information
16S sequences
- @ref: 67770
- description: Pseudomonas putida JCM 20005 gene for 16S rRNA, partial sequence
- accession: LC571912
- length: 1459
- database: ena
- NCBI tax ID: 303
External links
@ref: 67770
culture collection no.: JCM 20005, IAM 1003
straininfo link
- @ref: 113518
- straininfo: 105461
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113518 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID105461.1 |