Strain identifier
BacDive ID: 162670
Type strain: 
Species: Jeongeupia sp.
Strain history: K. Sudesh USM3.
NCBI tax ID(s): 2056245 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162670
keywords: genome sequence, Bacteria, mesophilic
description: Jeongeupia sp. JCM 19920 is a mesophilic bacterium of the family Chromobacteriaceae.
NCBI tax id
- NCBI tax id: 2056245
- Matching level: species
strain history
- @ref: 67770
- history: K. Sudesh USM3.
doi: 10.13145/bacdive162670.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Jeongeupia
- species: Jeongeupia sp.
- full scientific name: Jeongeupia Yoon et al. 2010
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Jeongeupia
species: Jeongeupia sp.
full scientific name: Jeongeupia sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Sequence information
Genome sequences
- @ref: 66792
- description: Jeongeupia sp. USM3
- accession: 1906741.3
- assembly level: complete
- database: patric
- NCBI tax ID: 1906741
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.422 | no |
| gram-positive | no | 98.14 | no |
| anaerobic | no | 98.712 | no |
| aerobic | yes | 69.392 | no |
| halophile | no | 88.537 | no |
| spore-forming | no | 93.962 | no |
| glucose-util | yes | 85.678 | no |
| flagellated | yes | 87.677 | no |
| thermophile | no | 99.23 | yes |
| glucose-ferment | no | 71.604 | no |
External links
@ref: 67770
culture collection no.: JCM 19920
literature
- topic: Genetics
- Pubmed-ID: 31893298
- title: Complete Genome Sequence of a Novel Polyhydroxyalkanoate (PHA) Producer, Jeongeupia sp. USM3 (JCM 19920) and Characterization of Its PHA Synthases.
- authors: Zain NA, Ng LM, Foong CP, Tai YT, Nanthini J, Sudesh K
- journal: Curr Microbiol
- DOI: 10.1007/s00284-019-01852-z
- year: 2020
- mesh: Acyltransferases/genetics/*metabolism, Betaproteobacteria/*enzymology/*genetics, Cupriavidus necator/genetics, *Genome, Bacterial, Malaysia, Phylogeny, Polyhydroxyalkanoates/*biosynthesis, *Soil Microbiology, Whole Genome Sequencing
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |