Strain identifier
BacDive ID: 162662
Type strain: 
Species: Halobacterium rubrum
Strain history: H.-L. Cui; Jiangsu Univ., China; TGN-42-S1.
NCBI tax ID(s): 1341552 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162662
keywords: 16S sequence, Archaea, mesophilic
description: Halobacterium rubrum JCM 19908 is a mesophilic archaeon that was isolated from Tanggu marine solar saltern.
NCBI tax id
- NCBI tax id: 1341552
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui; Jiangsu Univ., China; TGN-42-S1.
doi: 10.13145/bacdive162662.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halobacterium
- species: Halobacterium rubrum
- full scientific name: Halobacterium rubrum Han and Cui 2015
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halobacterium
species: Halobacterium rubrum
full scientific name: Halobacterium rubrum Han and Cui 2015
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Tanggu marine solar saltern
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Halobacterium rubrum strain TGN-42-S1 16S ribosomal RNA gene, partial sequence
- accession: KC914879
- length: 1473
- database: ena
- NCBI tax ID: 1341552
GC content
- @ref: 67770
- GC-content: 69.2
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 19908, CGMCC 1.12575
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25112838 | Halobacterium rubrum sp. nov., isolated from a marine solar saltern. | Han D, Cui HL | Arch Microbiol | 10.1007/s00203-014-1023-x | 2014 | Base Composition, China, DNA, Archaeal/genetics, Glycolipids/analysis, Halobacterium/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Lipids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, *Sodium Chloride | Enzymology |
| Phylogeny | 28901903 | Halobacterium litoreum sp. nov., isolated from a marine solar saltern. | Lu ZZ, Li Y, Zhou Y, Cui HL, Li ZR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002259 | 2017 | Base Composition, China, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/analysis, Halobacterium/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, *Water Microbiology | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |