Strain identifier
BacDive ID: 162624
Type strain: 
Species: Lentibacillus amyloliquefaciens
Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0015.
NCBI tax ID(s): 1472767 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162624
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lentibacillus amyloliquefaciens JCM 19838 is a mesophilic bacterium that was isolated from Saline sediment from Bohai Sea at Yantai City.
NCBI tax id
- NCBI tax id: 1472767
- Matching level: species
strain history
- @ref: 67770
- history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0015.
doi: 10.13145/bacdive162624.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Lentibacillus
- species: Lentibacillus amyloliquefaciens
- full scientific name: Lentibacillus amyloliquefaciens Wang et al. 2016
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Lentibacillus
species: Lentibacillus amyloliquefaciens
full scientific name: Lentibacillus amyloliquefaciens Wang et al. 2016
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Saline sediment from Bohai Sea at Yantai City
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_6520.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3088;97_3789;98_4811;99_6520&stattab=map
- Last taxonomy: Lentibacillus amyloliquefaciens
- 16S sequence: KJ002449
- Sequence Identity:
- Total samples: 234
- soil counts: 55
- aquatic counts: 36
- animal counts: 137
- plant counts: 6
Sequence information
16S sequences
- @ref: 67770
- description: Lentibacillus amyloliquefaciens strain LAM0015 16S ribosomal RNA gene, partial sequence
- accession: KJ002449
- length: 1472
- database: ena
- NCBI tax ID: 1472767
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lentibacillus amyloliquefaciens strain LAM0015 | 1472767.6 | complete | patric | 1472767 |
| 67770 | Lentibacillus amyloliquefaciens LAM0015 | GCA_001307805 | complete | ncbi | 1472767 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 41.12 | genome sequence analysis |
| 67770 | 43.1 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 81.249 | no |
| gram-positive | yes | 89.963 | no |
| anaerobic | no | 99.487 | no |
| aerobic | yes | 95.449 | no |
| halophile | yes | 96.687 | no |
| spore-forming | yes | 84.314 | no |
| thermophile | no | 96.743 | yes |
| glucose-util | yes | 87.684 | no |
| flagellated | no | 77.683 | no |
| glucose-ferment | no | 85.88 | no |
External links
@ref: 67770
culture collection no.: JCM 19838, ACCC 06401
literature
- topic: Phylogeny
- Pubmed-ID: 26545789
- title: Lentibacillus amyloliquefaciens sp. nov., a halophilic bacterium isolated from saline sediment sample.
- authors: Wang JL, Ma KD, Wang YW, Wang HM, Li YB, Zhou S, Chen XR, Kong DL, Guo X, He MX, Ruan ZY
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0618-9
- year: 2015
- mesh: Bacillaceae/classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/analysis/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/analysis/*metabolism
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |