Strain identifier
BacDive ID: 162591
Type strain: 
Species: Halapricum salinum
Strain history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1105.
NCBI tax ID(s): 1457250 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162591
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halapricum salinum JCM 19729 is a mesophilic archaeon that was isolated from Solar saltern in Gomso Bay.
NCBI tax id
- NCBI tax id: 1457250
- Matching level: species
strain history
- @ref: 67770
- history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1105.
doi: 10.13145/bacdive162591.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Haloarculaceae
- genus: Halapricum
- species: Halapricum salinum
- full scientific name: Halapricum salinum Song et al. 2014
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Haloarculaceae
genus: Halapricum
species: Halapricum salinum
full scientific name: Halapricum salinum Song et al. 2014
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solar saltern in Gomso Bay
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_187280.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17660;96_68903;97_89553;98_121844;99_187280&stattab=map
- Last taxonomy: Halapricum salinum subclade
- 16S sequence: KJ184544
- Sequence Identity:
- Total samples: 79
- soil counts: 14
- aquatic counts: 65
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Halapricum salinum strain CBA1105 16S ribosomal RNA gene, partial sequence | KF314042 | 1472 | ena | 1457250 |
| 67770 | Halapricum salinum strain CBA1105 identified-by Seong Woon Roh 16S ribosomal RNA gene, partial sequence | KJ184543 | 1472 | ena | 1457250 |
| 67770 | Halapricum salinum strain CBA1105 identified-by Seong Woon Roh 16S ribosomal RNA gene, partial sequence | KJ184544 | 1472 | ena | 1457250 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Halapricum salinum CBA1105 | GCA_000755225 | contig | ncbi | 1457250 |
| 66792 | Halapricum salinum strain CBA1105 | 1457250.14 | complete | patric | 1457250 |
GC content
- @ref: 67770
- GC-content: 66
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 63.753 | no |
| gram-positive | no | 97.142 | no |
| anaerobic | no | 93.703 | no |
| halophile | yes | 82.58 | no |
| spore-forming | no | 96.384 | no |
| glucose-util | yes | 87.543 | no |
| thermophile | no | 81.482 | no |
| aerobic | yes | 75.896 | no |
| flagellated | no | 95.326 | no |
| glucose-ferment | no | 82.525 | no |
External links
@ref: 67770
culture collection no.: JCM 19729, CCTCC AB 2015394, KCTC 4202
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24677144 | Halapricum salinum gen. nov., sp. nov., an extremely halophilic archaeon isolated from non-purified solar salt. | Song HS, Cha IT, Yim KJ, Lee HW, Hyun DW, Lee SJ, Rhee SK, Kim KN, Kim D, Choi JS, Seo MJ, Choi HJ, Bae JW, Rhee JK, Nam YD, Roh SW | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0156-x | 2014 | Archaeal Proteins/genetics, Cluster Analysis, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Multilocus Sequence Typing, Phylogeny, RNA, Ribosomal, 16S/genetics, Salts/*metabolism | Metabolism |
| Genetics | 25280890 | Draft genome sequence of Halapricum salinum CBA1105(T), an extremely halophilic archaeon isolated from solar salt. | Song HS, Lee HW, Yim KJ, Nam YD, Choi JS, Choi HJ, Seo MJ, Kim KN, Kim D, Rhee JK, Roh SW | Mar Genomics | 10.1016/j.margen.2014.09.006 | 2014 | Adaptation, Biological/*genetics, Base Composition, Base Sequence, Genome, Archaeal/*genetics, Halobacteriaceae/*genetics, Molecular Sequence Annotation, Molecular Sequence Data, Republic of Korea, *Salinity, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |