Strain identifier
BacDive ID: 162589
Type strain: 
Species: Arenimonas maotaiensis
Strain history: J. Lv YT8.
NCBI tax ID(s): 1446479 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162589
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Arenimonas maotaiensis JCM 19710 is a mesophilic, Gram-negative bacterium that was isolated from Fresh water of the Maotai section of Chishui River.
NCBI tax id
- NCBI tax id: 1446479
- Matching level: species
strain history
- @ref: 67770
- history: J. Lv YT8.
doi: 10.13145/bacdive162589.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Arenimonas
- species: Arenimonas maotaiensis
- full scientific name: Arenimonas maotaiensis Yuan et al. 2014
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Arenimonas
species: Arenimonas maotaiensis
full scientific name: Arenimonas maotaiensis Yuan et al. 2014
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.999
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Fresh water of the Maotai section of Chishui River
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_86790.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_5785;97_8624;98_60026;99_86790&stattab=map
- Last taxonomy: Arenimonas maotaiensis subclade
- 16S sequence: KF746926
- Sequence Identity:
- Total samples: 3520
- soil counts: 211
- aquatic counts: 3082
- animal counts: 191
- plant counts: 36
Sequence information
16S sequences
- @ref: 67770
- description: Arenimonas maotaiensis strain YT8 16S ribosomal RNA gene, partial sequence
- accession: KF746926
- length: 1505
- database: ena
- NCBI tax ID: 1446479
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Arenimonas maotaiensis CGMCC 1.12726 | GCA_014638745 | scaffold | ncbi | 1446479 |
| 66792 | Arenimonas maotaiensis strain CGMCC 1.12726 | 1446479.3 | wgs | patric | 1446479 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 98.095 | no |
| gram-positive | no | 98.623 | no |
| anaerobic | no | 98.902 | no |
| aerobic | yes | 84.333 | no |
| halophile | no | 94.767 | no |
| spore-forming | no | 97.348 | no |
| thermophile | no | 88.256 | yes |
| glucose-util | yes | 76.779 | no |
| motile | no | 90.495 | no |
| glucose-ferment | no | 90.396 | no |
External links
@ref: 67770
culture collection no.: JCM 19710, CGMCC 1.12726
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25212225 | Arenimonas maotaiensis sp. nov., isolated from fresh water. | Yuan X, Nogi Y, Tan X, Zhang RG, Lv J | Int J Syst Evol Microbiol | 10.1099/ijs.0.067769-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 25731739 | Arenimonas taoyuanensis sp. nov., a novel bacterium isolated from rice-field soil in China. | Zhang SY, Xiao W, Xia YS, Wang YX, Cui XL, Zhang NM | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0409-3 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oryza/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolism | Metabolism |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |