General

@ref: 67770

BacDive-ID: 162578

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Hymenobacter sedentarius JCM 19636 is a mesophilic bacterium that was isolated from Dry soil in Seoul.

NCBI tax id

• NCBI tax id: 1411621
• Matching level: species

strain history

• @ref: 67770
• history: M. K. Kim DG5B.

doi: 10.13145/bacdive162578.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Cytophagia
• order: Cytophagales
• family: Hymenobacteraceae
• genus: Hymenobacter
• species: Hymenobacter sedentarius
• full scientific name: Hymenobacter sedentarius Lee et al. 2016

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Hymenobacter

species: Hymenobacter sedentarius

full scientific name: Hymenobacter sedentarius Lee et al. 2016

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 25
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Dry soil in Seoul
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_1991.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_263;96_1104;97_1293;98_1557;99_1991&stattab=map
• Last taxonomy: Hymenobacter sedentarius
• 16S sequence: KF601295
• Sequence Identity:
• Total samples: 431
• soil counts: 269
• aquatic counts: 54
• animal counts: 69
• plant counts: 39

Sequence information

16S sequences

• @ref: 67770
• description: Hymenobacter sedentarius strain DG5B 16S ribosomal RNA gene, partial sequence
• accession: KF601295
• length: 1452
• database: ena
• NCBI tax ID: 1411621

Genome sequences

• @ref: 67770
• description: Hymenobacter sedentarius DG5B
• accession: GCA_001507645
• assembly level: complete
• database: ncbi
• NCBI tax ID: 1411621

GC content

• @ref: 67770
• GC-content: 59.8
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 19636, KCTC 32524

literature

• topic: Phylogeny
• Pubmed-ID: 27033203
• title: Hymenobacter sedentarius sp. nov., isolated from a soil.
• authors: Lee JJ, Kang MS, Joo ES, Jung HY, Kim MK
• journal: J Microbiol
• DOI: 10.1007/s12275-016-5386-3
• year: 2016
• mesh: Bacteroidetes/*classification/cytology/*isolation & purification/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, Gamma Rays, Genes, rRNA, Hydrogen-Ion Concentration, Lipids/analysis, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seoul, *Soil Microbiology, Temperature
• topic2: Phenotype

Reference