Strain identifier

BacDive ID: 162573

Type strain: Yes

Species: Lysinibacillus halotolerans

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM612.

NCBI tax ID(s): 1368476 (species)

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General

@ref: 67770

BacDive-ID: 162573

keywords: 16S sequence, Bacteria

description: Lysinibacillus halotolerans JCM 19611 is a bacterium that was isolated from Saline-alkaline soil from Lingxian County.

NCBI tax id

  • NCBI tax id: 1368476
  • Matching level: species

strain history

  • @ref: 67770
  • history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM612.

doi: 10.13145/bacdive162573.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Caryophanaceae
  • genus: Lysinibacillus
  • species: Lysinibacillus halotolerans
  • full scientific name: Lysinibacillus halotolerans Kong et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Ureibacillus halotolerans

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Caryophanaceae

genus: Lysinibacillus

species: Lysinibacillus halotolerans

full scientific name: Lysinibacillus halotolerans Kong et al. 2014

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 35

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Saline-alkaline soil from Lingxian County
  • geographic location: Shandong Province
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_42729.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3452;97_5123;98_6520;99_42729&stattab=map
  • Last taxonomy: Lysinibacillus halotolerans
  • 16S sequence: KF443809
  • Sequence Identity:
  • Total samples: 104
  • soil counts: 61
  • aquatic counts: 5
  • animal counts: 21
  • plant counts: 17

Sequence information

16S sequences

  • @ref: 67770
  • description: Lysinibacillus halotolerans strain LAM612 16S ribosomal RNA gene, partial sequence
  • accession: KF443809
  • length: 1430
  • database: nuccore
  • NCBI tax ID: 1368476

GC content

  • @ref: 67770
  • GC-content: 36.4
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 67770

culture collection no.: JCM 19611, ACCC 00718

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24814335Lysinibacillus halotolerans sp. nov., isolated from saline-alkaline soil.Kong D, Wang Y, Zhao B, Li Y, Song J, Zhai Y, Zhang C, Wang H, Chen X, Zhao B, Ruan ZInt J Syst Evol Microbiol10.1099/ijs.0.061465-02014Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28699866Description of Lysinibacillus telephonicus sp. nov., isolated from the screen of a cellular phone.Rahi P, Kurli R, Khairnar M, Jagtap S, Pansare AN, Dastager SG, Shouche YSInt J Syst Evol Microbiol10.1099/ijsem.0.0019432017Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Cell Phone, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/