General

@ref: 67770

BacDive-ID: 162488

keywords: 16S sequence, Bacteria, mesophilic

description: Pedobacter bambusae JCM 19364 is a mesophilic bacterium that was isolated from Soil of a bamboo plantation in Seoul.

NCBI tax id

• NCBI tax id: 1338429
• Matching level: species

strain history

• @ref: 67770
• history: T.-H. Yi THG-G118.

doi: 10.13145/bacdive162488.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Sphingobacteriia
• order: Sphingobacteriales
• family: Sphingobacteriaceae
• genus: Pedobacter
• species: Pedobacter bambusae
• full scientific name: Pedobacter bambusae Won et al. 2015

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter bambusae

full scientific name: Pedobacter bambusae Won et al.

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Soil of a bamboo plantation in Seoul
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

Sequence information

16S sequences

• @ref: 67770
• description: Pedobacter bambusae strain THG-G118 16S ribosomal RNA gene, partial sequence
• accession: KF150694
• length: 1443
• database: ena
• NCBI tax ID: 1338429

GC content

• @ref: 67770
• GC-content: 41.7
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 19364, KACC 17544

literature

• topic: Phylogeny
• Pubmed-ID: 25520261
• title: Pedobacter bambusae sp. nov., isolated from soil of a bamboo plantation.
• authors: Won KH, Kook M, Yi TH
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-014-0352-8
• year: 2014
• mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Pedobacter/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Poaceae/growth & development, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis
• topic2: Genetics

Reference