Strain identifier
BacDive ID: 162445
Type strain: 
Species: Vibrio ishigakensis
Strain history: T. Sawabe C216.
NCBI tax ID(s): 1481914 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162445
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Vibrio ishigakensis JCM 19241 is a mesophilic bacterium that was isolated from Seawater in the Ishigaki Island coral reef area.
NCBI tax id
- NCBI tax id: 1481914
- Matching level: species
strain history
- @ref: 67770
- history: T. Sawabe C216.
doi: 10.13145/bacdive162445.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio ishigakensis
- full scientific name: Vibrio ishigakensis Gao et al. 2018
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio ishigakensis
full scientific name: Vibrio ishigakensis Gao et al. 2018
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seawater in the Ishigaki Island coral reef area
- geographic location: Okinawa
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio ishigakensis strain C216 16S ribosomal RNA gene, complete sequence
- accession: KP790254
- length: 1490
- database: ena
- NCBI tax ID: 1481914
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio sp. JCM 19241 JCM19241 | 1481919.3 | wgs | patric | 1481914 |
| 66792 | Vibrio ishigakensis JCM 19241 | 2630968677 | draft | img | 1481914 |
| 67770 | Vibrio ishigakensis JCM19241 | GCA_000830475 | contig | ncbi | 1481914 |
GC content
- @ref: 67770
- GC-content: 47.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 75.634 | no |
| gram-positive | no | 98.295 | no |
| anaerobic | no | 98.009 | no |
| aerobic | yes | 85.522 | no |
| halophile | yes | 72.092 | no |
| spore-forming | no | 96.656 | no |
| thermophile | no | 99.528 | no |
| glucose-util | yes | 87.81 | no |
| flagellated | no | 78.248 | no |
| glucose-ferment | yes | 86.446 | no |
External links
@ref: 67770
culture collection no.: JCM 19241
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |