General

@ref: 67770

BacDive-ID: 162423

keywords: 16S sequence, Bacteria

description: Pontibacter humi JCM 19178 is a bacterium that was isolated from Soil sample collected at a mountain in the Seoul Women's University campus.

NCBI tax id

• NCBI tax id: 1470156
• Matching level: species

strain history

• @ref: 67770
• history: M. K. Kim SWU8.

doi: 10.13145/bacdive162423.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Cytophagia
• order: Cytophagales
• family: Hymenobacteraceae
• genus: Pontibacter
• species: Pontibacter humi
• full scientific name: Pontibacter humi Srinivasan et al. 2015

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Hymenobacteraceae

genus: Pontibacter

species: Pontibacter humi

full scientific name: Pontibacter humi Srinivasan et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Soil sample collected at a mountain in the Seoul Women's University campus
• country: Republic of Korea
• origin.country: KOR
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_48338.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_60;96_9568;97_11520;98_34837;99_48338&stattab=map
• Last taxonomy: Pontibacter humi subclade
• 16S sequence: KF975403
• Sequence Identity:
• Total samples: 307
• soil counts: 188
• aquatic counts: 35
• animal counts: 55
• plant counts: 29

Sequence information

16S sequences

• @ref: 67770
• description: Pontibacter humi strain SWU8 16S ribosomal RNA gene, partial sequence
• accession: KF975403
• length: 1447
• database: nuccore
• NCBI tax ID: 1470156

GC content

• @ref: 67770
• GC-content: 48.5
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 19178, KEMC 9004-131

literature

• topic: Phylogeny
• Pubmed-ID: 24748437
• title: Pontibacter humi sp. nov., isolated from mountain soil.
• authors: Srinivasan S, Lee JJ, Lee SS, Kim MK
• journal: Curr Microbiol
• DOI: 10.1007/s00284-014-0580-1
• year: 2014
• mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytophagaceae/*classification/genetics/*isolation & purification/physiology, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Korea, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
• topic2: Genetics

Reference