Strain identifier
BacDive ID: 162384
Type strain: 
Species: Isoptericola sp.
Strain history: T. Kudo L4.
NCBI tax ID(s): 1460645 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162384
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Isoptericola sp. JCM 19051 is a mesophilic, Gram-negative bacterium that was isolated from Siganid , coast.
NCBI tax id
- NCBI tax id: 1460645
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo L4.
doi: 10.13145/bacdive162384.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Isoptericola
- species: Isoptericola sp.
- full scientific name: Isoptericola Stackebrandt et al. 2004
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Promicromonosporaceae
genus: Isoptericola
species: Isoptericola sp.
full scientific name: Isoptericola sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.031
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.983 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Siganid (Siganus fuscescens), coast
- host species: Siganus fuscescens
- geographic location: coast of Nagasaki
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Isoptericola sp. JCM 19051 | 1460645.4 | wgs | patric | 1460645 |
| 66792 | Isoptericola sp. JCM 19051 | 2728369645 | draft | img | 1460645 |
| 67770 | Isoptericola sp. JCM 19051 | GCA_001310475 | contig | ncbi | 1460645 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 89.07 | no |
| gram-positive | no | 65.361 | no |
| anaerobic | no | 93.562 | no |
| halophile | no | 64.616 | no |
| spore-forming | no | 96.606 | no |
| thermophile | no | 97.308 | yes |
| glucose-util | yes | 86.315 | no |
| aerobic | no | 63.665 | no |
| flagellated | no | 91.615 | no |
| glucose-ferment | yes | 80.208 | no |
External links
@ref: 67770
culture collection no.: JCM 19051
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |