Strain identifier
BacDive ID: 162365
Type strain: 
Species: Silvimonas sp.
Strain history: T. Iida Avf-YS5.
NCBI tax ID(s): 1301084 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162365
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Silvimonas sp. JCM 19000 is a mesophilic, Gram-negative bacterium of the family Chromobacteriaceae.
NCBI tax id
- NCBI tax id: 1301084
- Matching level: species
strain history
- @ref: 67770
- history: T. Iida Avf-YS5.
doi: 10.13145/bacdive162365.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Silvimonas
- species: Silvimonas sp.
- full scientific name: Silvimonas Yang et al. 2005
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Silvimonas
species: Silvimonas sp.
full scientific name: Silvimonas sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.959
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.992 |
| 69481 | no | 100 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Silvimonas sp. JCM 19000 | GCA_001313065 | contig | ncbi | 1301084 |
| 66792 | Silvimonas sp. JCM 19000 | 1301084.5 | wgs | patric | 1301084 |
| 66792 | Silvimonas sp. JCM 19000 | 2734481929 | draft | img | 1301084 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 89.445 | no |
| gram-positive | no | 98.917 | no |
| anaerobic | no | 97.625 | no |
| halophile | no | 91.945 | no |
| spore-forming | no | 94.663 | no |
| thermophile | no | 99.272 | yes |
| glucose-util | yes | 95.134 | no |
| flagellated | yes | 51.145 | no |
| aerobic | no | 50 | no |
| glucose-ferment | no | 84.402 | no |
External links
@ref: 67770
culture collection no.: JCM 19000
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |