Strain identifier
BacDive ID: 162346
Type strain: 
Species: Cutibacterium acnes subsp. defendens
Strain history: I. Dekio K127.
NCBI tax ID(s): 1905725 (subspecies)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162346
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Cutibacterium acnes subsp. defendens JCM 18920 is a mesophilic bacterium that was isolated from Eczematous skin of atopic dermatitis patient.
NCBI tax id
- NCBI tax id: 1905725
- Matching level: subspecies
strain history
- @ref: 67770
- history: I. Dekio K127.
doi: 10.13145/bacdive162346.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Cutibacterium
- species: Cutibacterium acnes subsp. defendens
- full scientific name: Cutibacterium acnes subsp. defendens (McDowell et al. 2016) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Propionibacterium acnes subsp. defendens
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Cutibacterium
species: Cutibacterium acnes subsp. defendens
full scientific name: Cutibacterium acnes subsp. defendens (McDowell et al. 2016) Nouioui et al. 2018
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 94.5 | |
| 125439 | 97 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 94.6
spore formation
- @ref: 125439
- spore formation: no
- confidence: 97.9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Eczematous skin of atopic dermatitis patient
taxonmaps
- @ref: 69479
- File name: preview.99_663.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_410;97_465;98_535;99_663&stattab=map
- Last taxonomy: Cutibacterium acnes
- 16S sequence: AB628071
- Sequence Identity:
- Total samples: 60269
- soil counts: 3573
- aquatic counts: 7473
- animal counts: 47966
- plant counts: 1257
Sequence information
16S sequences
- @ref: 67770
- description: Cutibacterium acnes gene for 16S ribosomal RNA, partial sequence, strain: K127, Type II
- accession: AB628071
- length: 1200
- database: nuccore
- NCBI tax ID: 1747
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Propionibacterium acnes JCM 18920 | 1302244.3 | wgs | patric | 1302244 |
| 66792 | Cutibacterium acnes JCM 18920 | 2576861751 | draft | img | 1302244 |
| 67770 | Cutibacterium acnes JCM 18920 | GCA_000521445 | contig | ncbi | 1302244 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.096 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 67.088 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 79.579 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 70.862 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.814 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 94.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 89.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 97 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 94.6 |
External links
@ref: 67770
culture collection no.: JCM 18920
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |