Strain identifier
BacDive ID: 162346
Type strain:
Species: Cutibacterium acnes subsp. defendens
Strain history: I. Dekio K127.
NCBI tax ID(s): 1905725 (subspecies)
General
@ref: 67770
BacDive-ID: 162346
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Cutibacterium acnes subsp. defendens JCM 18920 is a mesophilic, Gram-positive bacterium that was isolated from Eczematous skin of atopic dermatitis patient.
NCBI tax id
- NCBI tax id: 1905725
- Matching level: subspecies
strain history
- @ref: 67770
- history: I. Dekio K127.
doi: 10.13145/bacdive162346.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Propionibacteriaceae
- genus: Cutibacterium
- species: Cutibacterium acnes subsp. defendens
- full scientific name: Cutibacterium acnes subsp. defendens (McDowell et al. 2016) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Propionibacterium acnes subsp. defendens
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Propionibacteriales
family: Propionibacteriaceae
genus: Cutibacterium
species: Cutibacterium acnes subsp. defendens
full scientific name: Cutibacterium acnes subsp. defendens (McDowell et al. 2016) Nouioui et al. 2018
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 90.89 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.983 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Eczematous skin of atopic dermatitis patient
taxonmaps
- @ref: 69479
- File name: preview.99_663.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15360;96_410;97_465;98_535;99_663&stattab=map
- Last taxonomy: Cutibacterium acnes
- 16S sequence: AB628071
- Sequence Identity:
- Total samples: 60269
- soil counts: 3573
- aquatic counts: 7473
- animal counts: 47966
- plant counts: 1257
Sequence information
16S sequences
- @ref: 67770
- description: Cutibacterium acnes gene for 16S ribosomal RNA, partial sequence, strain: K127, Type II
- accession: AB628071
- length: 1200
- database: ena
- NCBI tax ID: 1747
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Propionibacterium acnes JCM 18920 | 1302244.3 | wgs | patric | 1302244 |
66792 | Cutibacterium acnes JCM 18920 | 2576861751 | draft | img | 1302244 |
67770 | Cutibacterium acnes JCM 18920 | GCA_000521445 | contig | ncbi | 1302244 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 94.267 | no |
gram-positive | yes | 90.614 | no |
anaerobic | yes | 59.108 | no |
halophile | no | 82.855 | no |
spore-forming | no | 91.336 | no |
thermophile | no | 63.037 | no |
glucose-util | yes | 91.41 | no |
aerobic | no | 89.508 | no |
flagellated | no | 98.319 | no |
glucose-ferment | yes | 83.251 | no |
External links
@ref: 67770
culture collection no.: JCM 18920
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |