Strain identifier
BacDive ID: 162329
Type strain: 
Species: Psychrobacter sp.
Strain history: T. Kudo B295.
NCBI tax ID(s): 1298607 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162329
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Psychrobacter sp. JCM 18902 is a mesophilic, Gram-negative bacterium that was isolated from Intestinal samples of the frozen finless porpoise Neophocaena phocaenoides.
NCBI tax id
- NCBI tax id: 1298607
- Matching level: species
strain history
- @ref: 67770
- history: T. Kudo B295.
doi: 10.13145/bacdive162329.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Psychrobacter
- species: Psychrobacter sp.
- full scientific name: Psychrobacter Juni and Heym 1986
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Psychrobacter
species: Psychrobacter sp.
full scientific name: Psychrobacter sp.
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.997 | |
| 69480 | 90.907 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.997 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Intestinal samples of the frozen finless porpoise Neophocaena phocaenoides
- host species: Neophocaena phocaenoides
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Psychrobacter sp. JCM 18902 Psychrobacter sp. JCM18902 | GCA_904846615 | contig | ncbi | 1298607 |
| 66792 | Psychrobacter sp. JCM 18902 | 1298607.3 | wgs | patric | 1298607 |
| 66792 | Psychrobacter sp. JCM 18902 strain Psychrobacter sp. JCM18902 | 1298607.4 | wgs | patric | 1298607 |
| 66792 | Psychrobacter sp. JCM 18902 | 2576861785 | draft | img | 1298607 |
| 67770 | Psychrobacter sp. JCM 18902 | GCA_000586455 | contig | ncbi | 1298607 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 82.871 | no |
| gram-positive | no | 98.529 | no |
| anaerobic | no | 99.16 | no |
| aerobic | yes | 92.446 | no |
| halophile | yes | 80.588 | no |
| spore-forming | no | 97.334 | no |
| thermophile | no | 99.605 | no |
| glucose-util | no | 50.826 | no |
| flagellated | no | 89.768 | no |
| glucose-ferment | no | 93.704 | no |
External links
@ref: 67770
culture collection no.: JCM 18902
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |