Strain identifier
BacDive ID: 162237
Type strain: 
Species: Halorussus amylolyticus
Strain history: H.-L. Cui; Jiangsu Univ., China; YC93.
NCBI tax ID(s): 1126242 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162237
keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative
description: Halorussus amylolyticus JCM 18367 is a mesophilic, Gram-negative archaeon that was isolated from Yuncheng salt lake in Shanxi Province.
NCBI tax id
- NCBI tax id: 1126242
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui; Jiangsu Univ., China; YC93.
doi: 10.13145/bacdive162237.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halorussus
- species: Halorussus amylolyticus
- full scientific name: Halorussus amylolyticus Yuan et al. 2015
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halorussus
species: Halorussus amylolyticus
full scientific name: Halorussus amylolyticus Yuan et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.849
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.984 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Yuncheng salt lake in Shanxi Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Halorussus amylolyticus strain YC93 16S ribosomal RNA gene, partial sequence | JQ237117 | 1472 | ena | 1126242 |
| 67770 | Halorussus amylolyticus strain YC93 16S ribosomal RNA (rrnB) gene, partial sequence | KM368828 | 1472 | ena | 1126242 |
Genome sequences
- @ref: 67770
- description: Halorussus amylolyticus YC93
- accession: GCA_004143485
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1126242
GC content
- @ref: 67770
- GC-content: 64.6
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 71.189 | no |
| flagellated | no | 96.685 | no |
| flagellated | no | 96.685 | no |
| gram-positive | no | 96.835 | no |
| gram-positive | no | 96.835 | no |
| anaerobic | no | 96.445 | no |
| anaerobic | no | 96.445 | no |
| aerobic | yes | 88.028 | no |
| aerobic | yes | 88.028 | no |
| halophile | yes | 88.958 | no |
| halophile | yes | 88.958 | no |
| spore-forming | no | 93.49 | no |
| spore-forming | no | 93.49 | no |
| glucose-util | yes | 87.646 | no |
| glucose-util | yes | 87.646 | no |
| thermophile | no | 78.733 | yes |
| thermophile | no | 78.733 | yes |
| motile | no | 71.189 | no |
| glucose-ferment | no | 86.002 | no |
| glucose-ferment | no | 86.002 | no |
External links
@ref: 67770
culture collection no.: JCM 18367, CGMCC 1.12126
literature
- topic: Phylogeny
- Pubmed-ID: 26228463
- title: Halorussus amylolyticus sp. nov., isolated from an inland salt lake.
- authors: Yuan PP, Ye WT, Pan JX, Han D, Zhang WJ, Cui HL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000487
- year: 2015
- mesh: Base Composition, China, DNA, Archaeal/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Glycolipids/chemistry, Halobacteriaceae/*classification/genetics/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |