Strain identifier
BacDive ID: 162197
Type strain:
Species: Roseomonas sediminicola
Strain history: W.-T. Im FW-3.
NCBI tax ID(s): 1176538 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162197
keywords: 16S sequence, Bacteria, mesophilic
description: Roseomonas sediminicola JCM 18210 is a mesophilic bacterium that was isolated from Fresh water of duck lake in KAIST.
NCBI tax id
- NCBI tax id: 1176538
- Matching level: species
strain history
- @ref: 67770
- history: W.-T. Im FW-3.
doi: 10.13145/bacdive162197.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas sediminicola
- full scientific name: Roseomonas sediminicola He et al. 2019
synonyms
- @ref: 20215
- synonym: Neoroseomonas sediminicola
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas sediminicola
full scientific name: Roseomonas sediminicola He et al. 2019
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Fresh water of duck lake in KAIST
- geographic location: Daejeon
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_41934.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_266;96_5468;97_6593;98_17518;99_41934&stattab=map
- Last taxonomy: Roseomonas
- 16S sequence: JQ349047
- Sequence Identity:
- Total samples: 1550
- soil counts: 361
- aquatic counts: 948
- animal counts: 130
- plant counts: 111
Sequence information
16S sequences
- @ref: 67770
- description: Roseomonas sediminicola strain FW-3 16S ribosomal RNA gene, partial sequence
- accession: JQ349047
- length: 1409
- database: ena
- NCBI tax ID: 1176538
GC content
- @ref: 67770
- GC-content: 68
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 18210, KACC 16616
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24287870 | Roseomonas sediminicola sp. nov., isolated from fresh water. | He D, Kim JK, Jiang XY, Park HY, Sun C, Yu HS, Yoon MH, Kim SC, Jin FX, Im WT | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0065-4 | 2013 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Fresh Water/*microbiology, Methylobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
Phylogeny | 35778570 | Roseomonas rosulenta sp. nov., isolated from rice paddy soil. | Lee HJ, Whang KS | Arch Microbiol | 10.1007/s00203-022-03014-5 | 2022 | Bacterial Typing Techniques, DNA, Bacterial/genetics, *Methylobacteriaceae, *Oryza/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil | Transcriptome |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |