Strain identifier

BacDive ID: 16218

Type strain: No

Species: Streptomyces canus

Strain history: KCC S-0384 <-- IFO 12872 <-- SAJ <-- ISP 5275 <-- INA 2022/55.

NCBI tax ID(s): 58343 (species)

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General

@ref: 9426

BacDive-ID: 16218

DSM-Number: 40275

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Streptomyces canus DSM 40275 is a spore-forming bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 58343
  • Matching level: species

strain history

@refhistory
9426<- E.B. Shirling, ISP <- G.F. Gauze, INA
67770KCC S-0384 <-- IFO 12872 <-- SAJ <-- ISP 5275 <-- INA 2022/55.

doi: 10.13145/bacdive16218.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces canus
  • full scientific name: Streptomyces canus Heinemann et al. 1953 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces ciscaucasicus

@ref: 9426

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces canus

full scientific name: Streptomyces canus Heinemann et al. 1953 emend. Nouioui et al. 2018

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9426GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9426ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf

culture temp

@refgrowthtypetemperature
9426positivegrowth28
18577positiveoptimum28
67770positivegrowth28

Physiology and metabolism

spore formation

@refspore formationconfidence
69480yes92.05
69481yes100

halophily

  • @ref: 18577
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1857717234glucose+
1857722599arabinose+
1857717992sucrose+
1857718222xylose-
1857717268myo-inositol+
1857729864mannitol+
1857728757fructose+
1857726546rhamnose+
1857716634raffinose+
1857762968cellulose-
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18577+---+----++-+-++--+

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18577------+--++

Isolation, sampling and environmental information

isolation

  • @ref: 9426
  • sample type: soil
  • country: USSR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94261Risk group (German classification)
185771German classification

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces ciscaucasicus strain DSM 40275 16S ribosomal RNA gene, partial sequenceAY5085121474nuccore66877
20218Streptomyces ciscaucasicus strain IFO 12872 16S ribosomal RNA gene, partial sequenceAY9998501421nuccore66877
20218Streptomyces ciscaucasicus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4384D44099120nuccore66877
20218Streptomyces ciscaucasicus gene for 16S rRNA, partial sequence, strain: NBRC 12872AB1842081458nuccore66877

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces ciscaucasicus strain DSM 4027566877.3wgspatric58343
66792Streptomyces ciscaucasicus DSM 402752684622644draftimg58343
67770Streptomyces canus DSM 40275GCA_001514045scaffoldncbi58343

GC content

@refGC-contentmethod
6777070.3genome sequence analysis
6777070.2genome sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes89.422no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no96.002no
69480spore-formingspore-formingAbility to form endo- or exosporesyes92.05no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.189no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.5no
69480flagellatedmotile2+Ability to perform flagellated movementno88.5no

External links

@ref: 9426

culture collection no.: DSM 40275, ATCC 23626, ATCC 23918, CBS 839.68, IFO 12872, INA 2022/55, ISP 5275, NBRC 12872, RIA 1193, JCM 4384, BCRC 15126, CGMCC 4.1603, IFM 11212, IMET 42945, KCTC 19958, NRRL B-16362, VKM Ac-1184, VKM Ac-998

straininfo link

  • @ref: 85279
  • straininfo: 38133

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22888189Streptomyces ziwulingensis sp. nov., isolated from grassland soil.Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GHInt J Syst Evol Microbiol10.1099/ijs.0.043026-02012Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analysisGenetics
Phylogeny25424909Streptomyces seymenliensis sp. nov., isolated from soil.Tatar D, Sahin NAntonie Van Leeuwenhoek10.1007/s10482-014-0339-52014Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Lakes, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Turkey, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9426Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40275)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40275
18577Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40275.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85279Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID38133.1StrainInfo: A central database for resolving microbial strain identifiers