Strain identifier

BacDive ID: 16216

Type strain: Yes

Species: Streptomyces chrysomallus subsp. fumigatus

Strain history: NRRL B-2289 <-- W. Frommer.

NCBI tax ID(s): 285559 (subspecies)

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General

@ref: 10288

BacDive-ID: 16216

DSM-Number: 41424

keywords: 16S sequence, Bacteria, mesophilic, antibiotic compound production

description: Streptomyces chrysomallus subsp. fumigatus DSM 41424 is a mesophilic bacterium that produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 285559
  • Matching level: subspecies

strain history

@refhistory
10288<- NRRL
67770NRRL B-2289 <-- W. Frommer.

doi: 10.13145/bacdive16216.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces chrysomallus subsp. fumigatus
  • full scientific name: Streptomyces chrysomallus subsp. fumigatus Frommer 1959 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Kitasatospora fumigata

@ref: 10288

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces chrysomallus subsp. fumigatus

full scientific name: Streptomyces chrysomallus subsp. fumigatus Frommer 1959

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 10288
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10288positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

compound production

  • @ref: 10288
  • compound: actinomycin C

metabolite production

  • @ref: 67770
  • metabolite: actinomycin C
  • production: yes

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_148;97_159;98_177;99_208&stattab=map
  • Last taxonomy: Streptomycetaceae
  • 16S sequence: AB184645
  • Sequence Identity:
  • Total samples: 2039
  • soil counts: 1733
  • aquatic counts: 54
  • animal counts: 127
  • plant counts: 125

Safety information

risk assessment

  • @ref: 10288
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces chrysomallus subsp. fumigatus strain KCTC 9705 16S ribosomal RNA gene, partial sequenceAY9998231419ena285559
20218Streptomyces chrysomallus subsp. fumigatus gene for 16S rRNA, partial sequence, strain: NBRC 15394AB1846451465ena285559

External links

@ref: 10288

culture collection no.: DSM 41424, JCM 3371, NRRL B-2289, CGMCC 4.1589, IFO 15394, KCTC 9705, NBRC 15394

straininfo link

  • @ref: 85277
  • straininfo: 49993

literature

  • topic: Phylogeny
  • Pubmed-ID: 25491896
  • title: Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively.
  • authors: Take A, Matsumoto A, Omura S, Takahashi Y
  • journal: J Antibiot (Tokyo)
  • DOI: 10.1038/ja.2014.162
  • year: 2014
  • mesh: Acetylcysteine/*analogs & derivatives/metabolism, Anti-Bacterial Agents/*metabolism, DNA, Bacterial/genetics, Diterpenes/*metabolism, Gene Expression Regulation, Bacterial/physiology, Phylogeny, Species Specificity, Streptomyces/*classification/*metabolism/ultrastructure
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10288Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41424)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41424
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85277Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49993.1StrainInfo: A central database for resolving microbial strain identifiers