Strain identifier
BacDive ID: 162125
Type strain: 
Species: Natronomonas gomsonensis
Strain history: S.-A. Lee SA3.
NCBI tax ID(s): 1046043 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162125
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natronomonas gomsonensis JCM 17867 is a mesophilic archaeon that was isolated from Gomso solar saltern.
NCBI tax id
- NCBI tax id: 1046043
- Matching level: species
strain history
- @ref: 67770
- history: S.-A. Lee SA3.
doi: 10.13145/bacdive162125.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Natronomonas
- species: Natronomonas gomsonensis
- full scientific name: Natronomonas gomsonensis Kim et al. 2014
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Natronomonas
species: Natronomonas gomsonensis
full scientific name: Natronomonas gomsonensis Kim et al. 2014
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gomso solar saltern
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Natronomonas gomsonensis strain SA3 16S ribosomal RNA gene, partial sequence
- accession: JF950943
- length: 1383
- database: ena
- NCBI tax ID: 1046043
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Natronomonas gomsonensis KCTC 4088 | GCA_024300825 | complete | ncbi | 1046043 |
| 66792 | Natronomonas gomsonensis JCM 17867 | GCA_026712385 | scaffold | ncbi | 1046043 |
GC content
- @ref: 67770
- GC-content: 61.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 97.41 | no |
| gram-positive | no | 95.538 | no |
| anaerobic | no | 94.327 | no |
| aerobic | yes | 85.678 | no |
| halophile | yes | 87.887 | no |
| spore-forming | no | 94.404 | no |
| motile | no | 75.929 | no |
| glucose-ferment | no | 89.12 | no |
| thermophile | no | 73.926 | yes |
| glucose-util | yes | 80.287 | no |
External links
@ref: 67770
culture collection no.: JCM 17867, KCTC 4088
literature
- topic: Phylogeny
- Pubmed-ID: 23851717
- title: Natronomonas gomsonensis sp. nov., isolated from a solar saltern.
- authors: Kim TY, Kim SJ, Park SJ, Kim JG, Cha IT, Jung MY, Lee SA, Roh SW, Yim KJ, Itoh T, Rhee SK
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-013-9970-9
- year: 2013
- mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Geologic Sediments/microbiology, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Korea, Magnesium Chloride/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |