General

@ref: 67770

BacDive-ID: 162104

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aliidiomarina shirensis JCM 17761 is a mesophilic bacterium that was isolated from Water of Shira Lake in Khakasia.

NCBI tax id

• NCBI tax id: 1048642
• Matching level: species

strain history

• @ref: 67770
• history: H.-H. Chiu strain AIS.

doi: 10.13145/bacdive162104.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Alteromonadales
• family: Idiomarinaceae
• genus: Aliidiomarina
• species: Aliidiomarina shirensis
• full scientific name: Aliidiomarina shirensis Chiu et al. 2014

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Idiomarinaceae

genus: Aliidiomarina

species: Aliidiomarina shirensis

full scientific name: Aliidiomarina shirensis Chiu et al. 2014

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Water of Shira Lake in Khakasia
• geographic location: southern Siberia
• country: Russia
• origin.country: RUS

taxonmaps

• @ref: 69479
• File name: preview.99_12537.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_197;96_6416;97_7691;98_9455;99_12537&stattab=map
• Last taxonomy: Aliidiomarina shirensis subclade
• 16S sequence: JF922381
• Sequence Identity:
• Total samples: 158
• soil counts: 16
• aquatic counts: 84
• animal counts: 58

Sequence information

16S sequences

• @ref: 67770
• description: Aliidiomarina shirensis strain AIS 16S ribosomal RNA gene, partial sequence
• accession: JF922381
• length: 1437
• database: ena
• NCBI tax ID: 1048642

Genome sequences

• @ref: 67770
• description: Aliidiomarina shirensis AIS
• accession: GCA_003987345
• assembly level: contig
• database: ncbi
• NCBI tax ID: 1048642

GC content

• @ref: 67770
• GC-content: 45.8
• method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

External links

@ref: 67770

culture collection no.: JCM 17761, BCRC 80327

literature

• topic: Phylogeny
• Pubmed-ID: 24436066
• title: Aliidiomarina shirensis sp. nov., a halophilic bacterium isolated from Shira Lake in Khakasia, southern Siberia, and a proposal to transfer Idiomarina maris to the genus Aliidiomarina.
• authors: Chiu HH, Rogozin DY, Huang SP, Degermendzhy AG, Shieh WY, Tang SL
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.057851-0
• year: 2014
• mesh: Alteromonadaceae/*classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Siberia, Ubiquinone/chemistry
• topic2: Genetics

Reference