Strain identifier
BacDive ID: 162069
Type strain: 
Species: Thermus sp.
Strain history: T. Itoh IC-236.
NCBI tax ID(s): 1293589 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162069
keywords: genome sequence, 16S sequence, Bacteria, thermophilic, Gram-negative
description: Thermus sp. JCM 17653 is a thermophilic, Gram-negative bacterium that was isolated from Hot spring water.
NCBI tax id
- NCBI tax id: 1293589
- Matching level: species
strain history
- @ref: 67770
- history: T. Itoh IC-236.
doi: 10.13145/bacdive162069.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Thermales
- family: Thermaceae
- genus: Thermus
- species: Thermus sp.
- full scientific name: Thermus Brock and Freeze 1969 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Thermales
family: Thermaceae
genus: Thermus
species: Thermus sp.
full scientific name: Thermus sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.32
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 67770 | positive | growth | 70 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.928 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Hot spring water
- geographic location: Oyakotsu-jigoku, Wakoto, Hokkaido
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Thermus sp. JCM 17653 gene for 16S rRNA, partial sequence
- accession: AB661717
- length: 1377
- database: ena
- NCBI tax ID: 1293589
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thermus sp. JCM 17653 | GCA_001311585 | contig | ncbi | 1293589 |
| 66792 | Thermus sp. JCM 17653 | 1293589.3 | wgs | patric | 1293589 |
| 66792 | Thermus sp. JCM 17653 | 2675903331 | draft | img | 1293589 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 86.099 | no |
| gram-positive | no | 96.791 | no |
| anaerobic | no | 96.684 | no |
| aerobic | yes | 72.4 | no |
| halophile | no | 91.893 | no |
| spore-forming | no | 94.11 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 88.187 | no |
| flagellated | no | 97.871 | no |
| glucose-ferment | no | 82.135 | no |
External links
@ref: 67770
culture collection no.: JCM 17653
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |