General

@ref: 67770

BacDive-ID: 162029

keywords: 16S sequence, Archaea, mesophilic

description: Haladaptatus pallidirubidus JCM 17504 is a mesophilic archaeon that was isolated from Saline soil in Lup Nur region.

NCBI tax id

• NCBI tax id: 1008152
• Matching level: species

strain history

• @ref: 67770
• history: S.-K. Tang YIM 93656.

doi: 10.13145/bacdive162029.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Halobacteria
• order: Halobacteriales
• family: Halobacteriaceae
• genus: Haladaptatus
• species: Haladaptatus pallidirubidus
• full scientific name: Haladaptatus pallidirubidus Liu et al. 2015

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Haladaptatus

species: Haladaptatus pallidirubidus

full scientific name: Haladaptatus pallidirubidus Liu et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Saline soil in Lup Nur region
• geographic location: Xinjiang Province
• country: China
• origin.country: CHN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_191798.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17920;96_68909;97_89559;98_125010;99_191798&stattab=map
• Last taxonomy: Haladaptatus pallidirubidus subclade
• 16S sequence: JF449425
• Sequence Identity:
• Total samples: 190
• soil counts: 65
• aquatic counts: 113
• animal counts: 12

Sequence information

16S sequences

• @ref: 67770
• description: Haladaptatus pallidirubidus strain YIM 93656 16S ribosomal RNA gene, partial sequence
• accession: JF449425
• length: 1484
• database: ena
• NCBI tax ID: 1008152

GC content

• @ref: 67770
• GC-content: 57.4
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 17504, CCTCC AB 2010454

literature

• topic: Phylogeny
• Pubmed-ID: 25190334
• title: Haladaptatus pallidirubidus sp. nov., a halophilic archaeon isolated from saline soil samples in Yunnan and Xinjiang, China.
• authors: Liu BB, Zhao WY, Chu X, Hozzein WN, Prabhu DM, Wadaan MA, Tang SK, Zhang LL, Li WJ
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-014-0259-4
• year: 2014
• mesh: Aerobiosis, Archaea/chemistry/*classification/genetics/*isolation & purification, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Glycolipids/analysis, Hydrogen-Ion Concentration, Microbiological Techniques, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature
• topic2: Genetics

Reference