Strain identifier
BacDive ID: 161984
Type strain: 
Species: Vulcanisaeta thermophila
Strain history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; CBA1501.
NCBI tax ID(s): 867917 (species)
General
@ref: 67770
BacDive-ID: 161984
keywords: genome sequence, 16S sequence, Archaea, hyperthermophilic
description: Vulcanisaeta thermophila JCM 17228 is a hyperthermophilic archaeon that was isolated from Solfataric soil in the Mayon volcano on the island of Luzon in the Philippines.
NCBI tax id
- NCBI tax id: 867917
- Matching level: species
strain history
- @ref: 67770
- history: J.-W. Bae; Dept. of Biol., Kyung Hee Univ., South Korea; CBA1501.
doi: 10.13145/bacdive161984.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Thermoproteales
- family: Thermoproteaceae
- genus: Vulcanisaeta
- species: Vulcanisaeta thermophila
- full scientific name: Vulcanisaeta thermophila Yim et al. 2015
@ref: 67770
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Thermoproteales
family: Thermoproteaceae
genus: Vulcanisaeta
species: Vulcanisaeta thermophila
full scientific name: Vulcanisaeta thermophila Yim et al. 2015
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solfataric soil in the Mayon volcano on the island of Luzon in the Philippines
Sequence information
16S sequences
- @ref: 67770
- description: Vulcanisaeta sp. CBA1501 16S ribosomal RNA gene, partial sequence
- accession: HM594677
- length: 1441
- database: ena
- NCBI tax ID: 867917
Genome sequences
- @ref: 67770
- description: Vulcanisaeta thermophila CBA1501
- accession: GCA_001748385
- assembly level: contig
- database: ncbi
- NCBI tax ID: 867917
GC content
- @ref: 67770
- GC-content: 43.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.003 | no |
| gram-positive | no | 95.938 | no |
| anaerobic | yes | 97.201 | no |
| aerobic | no | 94.386 | no |
| halophile | no | 86.01 | no |
| spore-forming | no | 96.662 | no |
| thermophile | yes | 100 | yes |
| glucose-util | yes | 86.374 | no |
| motile | no | 82.595 | no |
| glucose-ferment | no | 69.741 | no |
External links
@ref: 67770
culture collection no.: JCM 17228, ATCC BAA 2415
literature
- topic: Phylogeny
- Pubmed-ID: 25323594
- title: Vulcanisaeta thermophila sp. nov., a hyperthermophilic and acidophilic crenarchaeon isolated from solfataric soil.
- authors: Yim KJ, Cha IT, Rhee JK, Song HS, Hyun DW, Lee HW, Kim D, Kim KN, Nam YD, Seo MJ, Bae JW, Roh SW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.065862-0
- year: 2014
- mesh: Base Composition, Crenarchaeota/*classification/genetics/isolation & purification, DNA, Archaeal/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Philippines, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |