Archive BacDiveID:10.13145/bacdive161893.20240916.9.1

Strain identifier

BacDive ID: 161893

Type strain:

Species: Actinomadura decatromicini

Strain history: S. Tanasupawat CYP1-5.

NCBI tax ID(s): 2604572 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 67770

BacDive-ID: 161893

keywords: genome sequence, 16S sequence, Bacteria, spore-forming

description: Actinomadura decatromicini JCM 16996 is a spore-forming bacterium that was isolated from Mountain soil in Chaiyaphum province.

NCBI tax id

NCBI tax id: 2604572
Matching level: species

strain history

@ref: 67770
history: S. Tanasupawat CYP1-5.

doi: 10.13145/bacdive161893.20240916.9.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura decatromicini
full scientific name: Actinomadura decatromicini Songsumanus et al. 2021

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura decatromicini

full scientific name: Actinomadura decatromicini Songsumanus et al. 2021

type strain: yes

Culture and growth conditions

culture temp

@ref: 67770
growth: positive
type: growth
temperature: 28

Physiology and metabolism

oxygen tolerance

@ref: 69480
oxygen tolerance: aerobe
confidence: 90.123

observation

@ref	observation
67770	Assay of Decatromicin B
67770	quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄), MK-9(H₂), MK-9(H₀)

Isolation, sampling and environmental information

isolation

@ref: 67770
sample type: Mountain soil in Chaiyaphum province
country: Thailand
origin.country: THA
continent: Asia

Sequence information

16S sequences

@ref: 67770
description: Actinomadura sp. CYP1-5 gene for 16S ribosomal RNA, partial sequence
accession: LC516920
length: 1513
database: nuccore
NCBI tax ID: 2604572

Genome sequences

@ref: 67770
description: Actinomadura decatromicini CYP1-5
accession: GCA_008121305
assembly level: contig
database: ncbi
NCBI tax ID: 2604572

GC content

@ref: 67770
GC-content: 72.2
method: genome sequence analysis

Genome-based predictions

predictions

@ref	trait	model	description	prediction	confidence	training_data
69480	gram-positive	gram-positive	Positive reaction to Gram-staining	yes	89.33	no
69480	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	94.077	no
69480	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	yes	90.123	no
69480	spore-forming	spore-forming	Ability to form endo- or exospores	yes	85.878	no
69480	thermophilic	thermophile	Ability to grow at temperatures above or equal to 45°C	no	93	yes
69480	flagellated	motile2+	Ability to perform flagellated movement	no	89	no

External links

@ref: 67770

culture collection no.: JCM 16996, KCTC 19916, TISTR 2901

literature

topic: Phylogeny
Pubmed-ID: 32724099
title: Actinomadura decatromicini sp. nov., isolated from mountain soil in Thailand.
authors: Songsumanus A, Kuncharoen N, Kudo T, Yuki M, Ohkuma M, Igarashi Y, Tanasupawat S
journal: J Antibiot (Tokyo)
DOI: 10.1038/s41429-020-0353-y
year: 2020
mesh: Actinomadura/*genetics/*isolation & purification/ultrastructure, Genome, Fungal, Phylogeny, *Soil Microbiology, Thailand
topic2: Genetics

Reference

@id	authors	title	doi/url
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes