Strain identifier
BacDive ID: 161876
Type strain: 
Species: Sulfuracidifex tepidarius
Strain history: T. Itoh IC-007.
NCBI tax ID(s): 1294262 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161876
keywords: genome sequence, 16S sequence, Archaea, Gram-negative
description: Sulfuracidifex tepidarius JCM 16834 is a Gram-negative archaeon that was isolated from Solfataric soil from Ohwaku-dani.
NCBI tax id
- NCBI tax id: 1294262
- Matching level: species
strain history
- @ref: 67770
- history: T. Itoh IC-007.
doi: 10.13145/bacdive161876.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Sulfuracidifex
- species: Sulfuracidifex tepidarius
- full scientific name: Sulfuracidifex tepidarius Itoh et al. 2020
@ref: 67770
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Sulfuracidifex
species: Sulfuracidifex tepidarius
full scientific name: Sulfuracidifex tepidarius Itoh et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 60
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solfataric soil from Ohwaku-dani
- geographic location: Kanagawa
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_187207.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17898;96_68861;97_89508;98_121789;99_187207&stattab=map
- Last taxonomy: Sulfuracidifex tepidarius subclade
- 16S sequence: LC382015
- Sequence Identity:
- Total samples: 3
- aquatic counts: 3
Sequence information
16S sequences
- @ref: 67770
- description: Sulfuracidifex tepidarius IC-007 gene for 16S ribosomal RNA, partial sequence
- accession: LC382015
- length: 1408
- database: nuccore
- NCBI tax ID: 1294262
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Sulfuracidifex tepidarius IC-007 | GCA_008326385 | complete | ncbi | 1294262 |
| 66792 | Sulfolobus sp. JCM 16834 strain IC-007 | 2173830.3 | complete | patric | 1294262 |
GC content
- @ref: 67770
- GC-content: 42.4
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 74.522 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 72.027 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.868 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 63.546 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 77.549 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 89 | no |
External links
@ref: 67770
culture collection no.: JCM 16834
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |