Strain identifier
BacDive ID: 161741
Type strain: 
Species: Psychroflexus lacisalsi
Strain history: S. Hosoi-Tanabe H7.
NCBI tax ID(s): 503928 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161741
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Psychroflexus lacisalsi JCM 16231 is a mesophilic, Gram-negative bacterium that was isolated from Antarctic hypersaline lake.
NCBI tax id
- NCBI tax id: 503928
- Matching level: species
strain history
- @ref: 67770
- history: S. Hosoi-Tanabe H7.
doi: 10.13145/bacdive161741.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Psychroflexus
- species: Psychroflexus lacisalsi
- full scientific name: Psychroflexus lacisalsi Zhang et al. 2010
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Psychroflexus
species: Psychroflexus lacisalsi
full scientific name: Psychroflexus lacisalsi Zhang et al.
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.991
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.997 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Antarctic hypersaline lake
taxonmaps
- @ref: 69479
- File name: preview.99_184825.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_423;96_4328;97_5277;98_6680;99_184825&stattab=map
- Last taxonomy: Psychroflexus lacisalsi
- 16S sequence: AB381940
- Sequence Identity:
- Total samples: 93
- aquatic counts: 92
- animal counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Psychroflexus lacisalsi gene for 16S ribosomal RNA, partial sequence
- accession: AB381940
- length: 1451
- database: ena
- NCBI tax ID: 503928
Genome sequences
- @ref: 66792
- description: Psychroflexus lacisalsi KACC 14089
- accession: GCA_020164495
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 503928
GC content
- @ref: 67770
- GC-content: 34.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 94.378 | no |
| gram-positive | no | 98.03 | no |
| anaerobic | no | 99.033 | no |
| aerobic | yes | 88.276 | no |
| halophile | yes | 74.131 | no |
| spore-forming | no | 96.646 | no |
| motile | no | 89.411 | no |
| thermophile | no | 98.479 | yes |
| glucose-util | yes | 81.079 | no |
| glucose-ferment | no | 88.472 | no |
External links
@ref: 67770
culture collection no.: JCM 16231, KACC 14089
literature
- topic: Phylogeny
- Pubmed-ID: 20437146
- title: Psychroflexus lacisalsi sp. nov., a moderate halophilic bacterium isolated from a hypersaline lake (Hunazoko-Ike) in Antarctica.
- authors: Zhang H, Hosoi-Tanabe S, Nagata S, Ban S, Imura S
- journal: J Microbiol
- DOI: 10.1007/s12275-010-0018-9
- year: 2010
- mesh: Antarctic Regions, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |