Strain identifier

BacDive ID: 161623

Type strain: No

Species: Parabacteroides gordonii

Strain history: M. Sakamoto MS-2 <-- N. Matsunaga strain 2.

NCBI tax ID(s): 574930 (species)

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General

@ref: 67770

BacDive-ID: 161623

keywords: 16S sequence, Bacteria

description: Parabacteroides gordonii JCM 15725 is a bacterium that was isolated from Human blood cultures.

NCBI tax id

  • NCBI tax id: 574930
  • Matching level: species

strain history

  • @ref: 67770
  • history: M. Sakamoto MS-2 <-- N. Matsunaga strain 2.

doi: 10.13145/bacdive161623.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Tannerellaceae
  • genus: Parabacteroides
  • species: Parabacteroides gordonii
  • full scientific name: Parabacteroides gordonii Sakamoto et al. 2009

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Tannerellaceae

genus: Parabacteroides

species: Parabacteroides gordonii

full scientific name: Parabacteroides gordonii Sakamoto et al. 2009

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-10

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human blood cultures

taxonmaps

  • @ref: 69479
  • File name: preview.99_3935.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_126;96_2004;97_2413;98_2983;99_3935&stattab=map
  • Last taxonomy: Parabacteroides gordonii subclade
  • 16S sequence: AB470344
  • Sequence Identity:
  • Total samples: 17375
  • soil counts: 84
  • aquatic counts: 362
  • animal counts: 16868
  • plant counts: 61

Sequence information

16S sequences

  • @ref: 67770
  • description: Parabacteroides gordonii gene for 16S ribosomal RNA, partial sequence, strain: JCM 15725
  • accession: AB470344
  • length: 1487
  • database: nuccore
  • NCBI tax ID: 574930

GC content

  • @ref: 67770
  • GC-content: 45.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 15725

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/