Strain identifier
BacDive ID: 161598
Type strain: 
Species: Commensalibacter intestini
Strain history: S. W. Roh A911 <-- W.-J. Lee.
NCBI tax ID(s): 1088868 (strain), 479936 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161598
keywords: 16S sequence, Bacteria, mesophilic
description: Commensalibacter intestini JCM 15511 is a mesophilic bacterium that was isolated from Gut of Drosophila melanogaster.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 479936 | species |
| 1088868 | strain |
strain history
- @ref: 67770
- history: S. W. Roh A911 <-- W.-J. Lee.
doi: 10.13145/bacdive161598.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Commensalibacter
- species: Commensalibacter intestini
- full scientific name: Commensalibacter intestini Roh et al. 2019
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Commensalibacter
species: Commensalibacter intestini
full scientific name: Commensalibacter intestini Roh et al. 2019
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gut of Drosophila melanogaster
- host species: Drosophila melanogaster
taxonmaps
- @ref: 69479
- File name: preview.99_5140.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_2501;97_3054;98_3832;99_5140&stattab=map
- Last taxonomy: Commensalibacter intestini subclade
- 16S sequence: EU409601
- Sequence Identity:
- Total samples: 2329
- soil counts: 205
- aquatic counts: 198
- animal counts: 1708
- plant counts: 218
Sequence information
16S sequences
- @ref: 67770
- description: Commensalibacter intestini strain A911 16S ribosomal RNA gene, partial sequence
- accession: EU409601
- length: 1482
- database: ena
- NCBI tax ID: 1088868
GC content
- @ref: 67770
- GC-content: 37
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 15511, KCTC 22117, LMG 27436
straininfo link
- @ref: 113462
- straininfo: 387443
literature
- topic: Phylogeny
- Pubmed-ID: 18723651
- title: Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster.
- authors: Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Ryu JH, Kim SH, Lee WJ, Bae JW
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.00301-08
- year: 2008
- mesh: Acetobacteraceae/chemistry/*classification/genetics/*isolation & purification, Animals, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Drosophila melanogaster/*microbiology, Fatty Acids/analysis, Gastrointestinal Tract/*microbiology, Genes, rRNA, Molecular Sequence Data, *Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113462 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID387443.1 |