Strain identifier
BacDive ID: 161565
Type strain: 
Species: Serratia marcescens
Strain history: T. Morohoshi AS-1.
NCBI tax ID(s): 615 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161565
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Serratia marcescens JCM 15057 is a mesophilic, motile bacterium that was isolated from Soil in Utsunomiya.
NCBI tax id
- NCBI tax id: 615
- Matching level: species
strain history
- @ref: 67770
- history: T. Morohoshi AS-1.
doi: 10.13145/bacdive161565.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Serratia
- species: Serratia marcescens
- full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Serratia marcescens subsp. sakuensis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Yersiniaceae
genus: Serratia
species: Serratia marcescens
full scientific name: Serratia marcescens Bizio 1823
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.418 | |
| 69480 | 99.956 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.747 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil in Utsunomiya
- geographic location: Tochigi Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_289.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_244;99_289&stattab=map
- Last taxonomy: Serratia marcescens
- 16S sequence: AB270613
- Sequence Identity:
- Total samples: 22704
- soil counts: 1270
- aquatic counts: 2336
- animal counts: 18103
- plant counts: 995
Sequence information
16S sequences
- @ref: 67770
- description: Serratia marcescens gene for 16S rRNA, partial sequene, strain: AS-1
- accession: AB270613
- length: 1438
- database: ena
- NCBI tax ID: 615
Genome sequences
- @ref: 66792
- description: Serratia marcescens strain AS-1
- accession: 615.831
- assembly level: wgs
- database: patric
- NCBI tax ID: 615
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.026 | no |
| anaerobic | no | 98.022 | no |
| halophile | no | 92.605 | no |
| spore-forming | no | 94.597 | no |
| glucose-util | yes | 94.823 | no |
| thermophile | no | 99.461 | yes |
| flagellated | no | 60.801 | no |
| aerobic | yes | 91.388 | no |
| motile | yes | 90.068 | no |
| glucose-ferment | yes | 91.013 | no |
External links
@ref: 67770
culture collection no.: JCM 15057
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |