Strain identifier
BacDive ID: 161557
Type strain:
Species: Bradyrhizobium oligotrophicum
Strain history: H. Ohta <-- T. Hattori S55.
NCBI tax ID(s): 44255 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161557
keywords: 16S sequence, Bacteria, mesophilic
description: Bradyrhizobium oligotrophicum JCM 1496 is a mesophilic bacterium that was isolated from Paddy field soil in Miyagi Pref..
NCBI tax id
- NCBI tax id: 44255
- Matching level: species
strain history
- @ref: 67770
- history: H. Ohta <-- T. Hattori S55.
doi: 10.13145/bacdive161557.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Nitrobacteraceae
- genus: Bradyrhizobium
- species: Bradyrhizobium oligotrophicum
- full scientific name: Bradyrhizobium oligotrophicum (Ohta and Hattori 1985) Ramírez-Bahena et al. 2013
synonyms
- @ref: 20215
- synonym: Agromonas oligotrophica
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Nitrobacteraceae
genus: Bradyrhizobium
species: Bradyrhizobium oligotrophicum
full scientific name: Bradyrhizobium oligotrophicum (Ohta and Hattori 1985) Ram¡rez-Bahena et al. 2013
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Paddy field soil in Miyagi Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_466.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_297;97_329;98_370;99_466&stattab=map
- Last taxonomy: Bradyrhizobium
- 16S sequence: LC379120
- Sequence Identity:
- Total samples: 526
- soil counts: 181
- aquatic counts: 150
- animal counts: 111
- plant counts: 84
Sequence information
16S sequences
- @ref: 67770
- description: Bradyrhizobium oligotrophicum gene for 16S rRNA, partial sequence, strain: JCM 1496
- accession: LC379120
- length: 1411
- database: ena
- NCBI tax ID: 44255
GC content
- @ref: 67770
- GC-content: 64.7
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 1496
straininfo link
- @ref: 113458
- straininfo: 63190
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
113458 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID63190.1 |