Strain identifier
BacDive ID: 161523
Type strain: 
Species: Herbaspirillum rubrisubalbicans
Strain history: K. Minamisawa B501 (Herbaspirillum sp.).
NCBI tax ID(s): 80842 (species)
General
@ref: 67770
BacDive-ID: 161523
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Herbaspirillum rubrisubalbicans JCM 14685 is a mesophilic bacterium that was isolated from Stem of wild rice W0012.
NCBI tax id
- NCBI tax id: 80842
- Matching level: species
strain history
- @ref: 67770
- history: K. Minamisawa B501 (Herbaspirillum sp.).
doi: 10.13145/bacdive161523.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Herbaspirillum
- species: Herbaspirillum rubrisubalbicans
- full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996
synonyms
@ref synonym 20215 Phytomonas rubrisubalbicans 20215 Pseudomonas rubrisubalbicans
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Herbaspirillum
species: Herbaspirillum rubrisubalbicans
full scientific name: Herbaspirillum rubrisubalbicans (Christopher and Edgerton 1930) Baldani et al. 1996
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Stem of wild rice (Oryza officinalis) W0012
- host species: Oryza officinalis
taxonmaps
- @ref: 69479
- File name: preview.99_632.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_128;97_137;98_154;99_632&stattab=map
- Last taxonomy: Herbaspirillum
- 16S sequence: AB049133
- Sequence Identity:
- Total samples: 5208
- soil counts: 646
- aquatic counts: 1120
- animal counts: 1886
- plant counts: 1556
Sequence information
16S sequences
- @ref: 67770
- description: Herbaspirillum sp. B501 gene for 16S rRNA, partial sequence
- accession: AB049133
- length: 1487
- database: ena
- NCBI tax ID: 137773
Genome sequences
- @ref: 67770
- description: Herbaspirillum sp. B501
- accession: GCA_000333575
- assembly level: contig
- database: ncbi
- NCBI tax ID: 137773
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 84.87 | no |
| flagellated | no | 62.207 | no |
| gram-positive | no | 98.398 | no |
| anaerobic | no | 98.278 | no |
| aerobic | yes | 86.522 | no |
| halophile | no | 94.585 | no |
| spore-forming | no | 93.522 | no |
| thermophile | no | 99.119 | no |
| glucose-util | yes | 89.683 | no |
| glucose-ferment | no | 90.871 | no |
External links
@ref: 67770
culture collection no.: JCM 14685
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |