Strain identifier
BacDive ID: 161515
Type strain: 
Species: Unidentified bacterium
Strain history: K. Minamisawa B6.
NCBI tax ID(s): 1869227 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 161515
keywords: genome sequence, 16S sequence, mesophilic, Gram-negative
description: Unidentified bacterium JCM 14676 is a mesophilic, Gram-negative prokaryote that was isolated from Stem of cultivated rice, Oryza sativa Bu-24.
NCBI tax id
- NCBI tax id: 1869227
- Matching level: species
strain history
- @ref: 67770
- history: K. Minamisawa B6.
doi: 10.13145/bacdive161515.20250331.9.3
Name and taxonomic classification
@ref: 67770
phylum: Not assigned to order
class: Not assigned to order
order: Not assigned to order
family: Not assigned to family
genus: Not assigned to family
species: Unidentified bacterium
full scientific name: Unidentified bacterium
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 99.8 |
| 125438 | negative | 94.597 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 97.1
spore formation
- @ref: 125439
- spore formation: no
- confidence: 98.9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Stem of cultivated rice, Oryza sativa Bu-24
- host species: Oryza sativa
Sequence information
16S sequences
- @ref: 67770
- description: Cytophagales str. B6 gene for 16S rRNA, partial sequence
- accession: AB029902
- length: 483
- database: nuccore
- NCBI tax ID: 100480
Genome sequences
- @ref: 67770
- description: Cytophagales bacterium B6
- accession: GCA_000333295
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 100480
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 94.597 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.25 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.384 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.535 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.197 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 86.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 71.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.1 |
External links
@ref: 67770
culture collection no.: JCM 14676
Reference
| @id | authors | doi/url | title |
|---|---|---|---|
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |