Strain identifier
BacDive ID: 161475
Type strain: 
Species: Pseudomonas putida
Strain history: K. Komagata <-- R. Hugh 1310 <-- ATCC 598 <-- B. W. Hammer ("Pseudomonas mildenbergii").
NCBI tax ID(s): 303 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 161475
keywords: genome sequence, Bacteria, motile
description: Pseudomonas putida JCM 14351 is a motile bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 303
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata <-- R. Hugh 1310 <-- ATCC 598 <-- B. W. Hammer ("Pseudomonas mildenbergii").
doi: 10.13145/bacdive161475.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas putida
- full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacillus putidus 20215 Arthrobacter siderocapsulatus
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas putida
full scientific name: Pseudomonas putida (Trevisan 1889) Migula 1895
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 92.118
Sequence information
Genome sequences
- @ref: 67770
- description: Pseudomonas putida NRRL B-251
- accession: GCA_005930605
- assembly level: contig
- database: ncbi
- NCBI tax ID: 303
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 99.098 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 92.118 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.47 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.986 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 87.724 | no |
External links
@ref: 67770
culture collection no.: JCM 14351, ATCC 598, NRRL B-251
straininfo link
- @ref: 113427
- straininfo: 34624
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 113427 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID34624.1 |