Strain identifier
BacDive ID: 161389
Type strain: 
Species: Phocaeicola barnesiae
Strain history: M. Sakamoto <-- P. T. N. Lan EG6.
NCBI tax ID(s): 376804 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161389
keywords: 16S sequence, Bacteria, mesophilic
description: Phocaeicola barnesiae JCM 13655 is a mesophilic bacterium that was isolated from Chicken cecum.
NCBI tax id
- NCBI tax id: 376804
- Matching level: species
strain history
- @ref: 67770
- history: M. Sakamoto <-- P. T. N. Lan EG6.
doi: 10.13145/bacdive161389.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Phocaeicola
- species: Phocaeicola barnesiae
- full scientific name: Phocaeicola barnesiae (Lan et al. 2006) García-López et al. 2020
synonyms
- @ref: 20215
- synonym: Bacteroides barnesiae
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Phocaeicola
species: Phocaeicola barnesiae
full scientific name: Phocaeicola barnesiae (Lan et al. 2006) Garc¡a-L¢pez et al. 2020
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-10, MK-11
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Chicken cecum
taxonmaps
- @ref: 69479
- File name: preview.99_178679.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_258;96_31737;97_40154;98_52312;99_178679&stattab=map
- Last taxonomy: Phocaeicola barnesiae subclade
- 16S sequence: AB253729
- Sequence Identity:
- Total samples: 1360
- soil counts: 4
- aquatic counts: 36
- animal counts: 1318
- plant counts: 2
Sequence information
16S sequences
- @ref: 67770
- description: Bacteroides barnesiae gene for 16S ribosomal RNA, partial seuqnece, strain: JCM 13655
- accession: AB253729
- length: 1456
- database: ena
- NCBI tax ID: 376804
GC content
- @ref: 67770
- GC-content: 46.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 13655
straininfo link
- @ref: 113389
- straininfo: 294000
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113389 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID294000.1 |